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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacctgggtgcaaaggattagtttactgttttaatgatcttaagttagttgatgaccttgtgcttactttgattttgcatttgacatatttttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAGCAAAGGGATGCATCTTGGTCAAAATTTTGGTTCTGCAGAGCCATTAGTT

Basic information

species Vitis vinifera
transcript Vv16s0039g00610.t01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720341|gb|EE096178.1|EE096178
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110719382|gb|EE097295.1|EE097295
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110719245|gb|EE096998.1|EE096998
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110719610|gb|EE094888.1|EE094888
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110726387|gb|EE102122.1|EE102122
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAATTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110720480|gb|EE096437.1|EE096437
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110719656|gb|EE094976.1|EE094976
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110719042|gb|EE096563.1|EE096563
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110379689|gb|EC944903.1|EC944903
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACTGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110409593|gb|EC975259.1|EC975259
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACTGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|110718317|gb|EE095014.1|EE095014
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG
EST: gi|161714250|gb|FC064153.1|FC064153
EST:     GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAG                         TGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACTGAGTTTAG
genomic: GAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGgtaagcatgc ... tttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgatgaccttgtgcttactttgattttgcatttgacatatttttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAGCAAAGGGATGCATCTTGGTCAAAATTTTGGTTCTGCAGAGCCATTAGTT
                                         tattttt  CT-rich tract
                                 atttgacatattttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacctgggtgcaaaggattagtttactgttttaatgatcttaagttagttgatgaccttgtgcttactttgattttgcatttgacatatttttatatcagTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAGCAAAGGGATGCATCTTGGTCAAAATTTTGGTTCTGCAGAGCCATTAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - caaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg