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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaaagttgtgctgttttttcttggaaggtctccctccactgtgtatgaaattaagaaaaaaatgtaaaattaaaaaagaaacttcctcttttaagcacatttttttttctatttttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG

Basic information

species Vitis vinifera
transcript Vv16s0022g02320.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 3'ss of exon 14
gtaggaaagttgtgctgttttttcttggaaggtctccctccactgtgtatgaaattaagaaaaaaatgtaaaattaaaaaagaaacttcctcttttaagcacatttttttttctatttttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG
          || | ||||     ||  || || |  ||  |  |  ||| | | | |  ||| |            || |   |  || | | ||    || || ||              ||||| | ||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| | |||| |||||||||
------gtaatgagatgttacacattataatgtttttctaaataggatattagactcatcaaagac-----------aagaatgatctcttatgtttgatactttcttc-------------agGGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAG

upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G025854_T02 (Zea mays), 3'ss of exon 14
gtaggaaagttgtgctgttttttcttggaaggtctccctccactgtgtatgaaattaagaaaaaaatgtaaaattaaaaaagaaacttcctcttttaagcacatttttttttctatttttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG
                                | |     ||||  |  ||    | |        |   | ||   |  ||           |||||||       ||   |||||||| |||||  | ||  |||| |||||||| ||||||||||||||||||||||| || ||||||| | ||||||||||||||
----------------------------gtaatgtgatgtcacttcgcttgcttctcatttttgtcttggagatggtaggag---------tctttaagc-------ttgaactattttt-tagGGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAG

upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 14
gtaggaaagttgtgctgttttttcttggaaggtctccctccactgtgtatgaaattaagaaaaaaatgtaaaattaaaaaagaaacttcctcttttaagcacatttttttttctatttttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG
                                  |        | || |     ||| | |   |   |    |||||| ||||    | |           ||| | | || || ||  | ||||| | |||||||| |||||||| ||||||||| | || ||||||||||||||||||   || || |||||||||
---------------------------------gttgaaattttatgcacacgtttaggtattcatcatt---ttaaaacagaagtgccatt----------attctgtattttaatt--gcagGGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAG

upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 14
gtaggaaagttgtgctgttttttcttggaaggtctccctccactgtgtatgaaattaagaaaaaaatgtaaaattaaaaaagaaacttcctcttttaagcacatttttttttctatt-tttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG
                                  |       || || || |||| |||   |  || |||  ||| | |     |     | ||||| |  | |   |    | || ||   ||||  | || || |||||||| || ||||||||||||||||||||||| || || ||||  ||||| ||||| |||
---------------------------------gtgggattgctttggataaaatgaagttcactatttaattttagatatagtgc-----cgtttaaacttactggatgcaatcttgttctcagGGGCTGGCACGTTCTATGCCGACAAGTGGTGCTCTTGATCGTGTTGCCGAGAAGTTGAAGCTTCCTTTCTTCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattaaaaaagaaacttcctcttttaagcacatttttttttctatttttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG
                              cacatttttttttcta  CT-rich tract
                       ttttaagcacattttt  TA-rich tract