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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaatgttttttgtctactaaatttttttcagtattatttgaaatggcattactaatccagtttcccttgcacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG

Basic information

species Vitis vinifera
transcript Vv16s0022g01770.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 11
------gtacaaaatgttttttgtctactaaatttttttcagtat-------tatttgaaatggcattactaatccagtttcccttgcacaat-acagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG
       ||     | |||||| | ||||    |   |   ||||         | |    || | | | || |  | ||||| |       |  ||||||||||||||||||||| |||||||| || ||  ||||||||||  |||||
gtatgcatatgctgttttttttatttactgttctgcgtcttgtatgtcctaccttctttcctgacttcaata-tttaatttccttgatttggttgcagTGGTGAAACTGAGGATACATTCATTGCTGATCTGGCAGTTGGTTTATCCACG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G048371_T01 (Zea mays), 3'ss of exon 15
-------------------gtacaaaatgttttttgtctactaaatttttttcagtattatttgaaatggcattactaatccagtttcccttgcacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG
                    |||   |||||| ||   ||||||   ||||    | || | ||   || | || || ||         || ||       |||||||| |||||||| ||||||||||| || ||  ||||||||||| |||||
gtaactatagtttgtgttgctacttcatgtttcttaggtactaa---ttttgtgattttgtctgg--tgccgttcctgatgttaaccatct-gctgttcgtagTGGTGAGACTGAGGACACTTTCATTGCTGATCTGGCAGTTGGTTTGTCCACG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA09G28100.1 (Glycine max), 3'ss of exon 14
gtacaaaatgttttttgtctactaaatttttttcagtattatttgaaatggcattactaatccagtttcccttgcacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG
         || |||  |||  |   |    ||  ||||||||     || ||  ||||||    ||   ||||   | |  |||||||||||||||||||| |||||||| ||||| |||||||| || || || 
---------gtatttgttctgttttgtgacatt--gtattattctttgtg-cac-actaatgtgtttcatcttgtttattgtagTGGTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA16G32960.1 (Glycine max), 3'ss of exon 14
---------------gtacaaaatgttttttgtctactaaatttttttc-------agtattatt--tgaaatggcattactaatccagtttcccttgcacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG
                ||        ||| | || | |   | | |||        | |||||||  |   |||     ||||||    ||   |||||  | |  |||||||||||||||||||| |||||||| ||||| |||||||| || || || 
gtactgaatgtttcattattcttccctttgtatccatttgttctattttgtgacatactattattctttgtatgtgcacactaatgtgtttcatcttgcttattgtagTGGTGAAACTGAGGATACCTTCATTGCTGACCTATCAGTTGGATTAGCAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134221|gb|CB919559.1|CB919559
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|29783193|gb|CB349213.2|CB349213
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110399162|gb|EC965655.1|EC965655
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71882930|gb|DT031985.1|DT031985
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71890438|gb|DT039493.1|DT039493
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|22009325|gb|BQ794359.1|BQ794359
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCATTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110716823|gb|EE092142.1|EE092142
EST:     GAAAATGTCAAAAAC-AGCTGGCTTGGGGTGTTATGGCAAGTCCCCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCA
genomic: GAAAATGTCTAAA-CGAGCTGGCT-GGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCA
EST: gi|27586582|gb|CB009277.1|CB009277
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|28968210|gb|CB347243.1|CB347243
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30297237|gb|CB974031.1|CB974031
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|33408992|gb|CF214619.1|CF214619
EST:     GTGAAAATGTCTAAACGAGCTGACTGGGGTGTTATGGCAAGCCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|37184490|gb|CF603844.1|CF603844
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|156732544|gb|EV236665.1|EV236665
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110408001|gb|EC973621.1|EC973621
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71866052|gb|DT015107.1|DT015107
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|26267083|gb|CA818146.1|CA818146
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|22008750|gb|BQ793784.1|BQ793784
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCATTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|22010889|gb|BQ795923.1|BQ795923
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30297383|gb|CB974177.1|CB974177
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30126213|gb|CB911552.1|CB911552
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30297814|gb|CB974608.1|CB974608
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110720665|gb|EE096796.1|EE096796
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAAACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|26266435|gb|CA817498.1|CA817498
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110422151|gb|EC988464.1|EC988464
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110695109|gb|EE072750.1|EE072750
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110732424|gb|EE107698.1|EE107698
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|27585372|gb|CB008067.1|CB008067
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|34543958|gb|CF512190.1|CF512190
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCATCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110405512|gb|EC971053.1|EC971053
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110700865|gb|EE077893.1|EE077893
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|34548911|gb|CF517143.1|CF517143
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGGTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30131875|gb|CB917214.1|CB917214
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|22008400|gb|BQ793434.1|BQ793434
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30301117|gb|CB977911.1|CB977911
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110715456|gb|EE093529.1|EE093529
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30306141|gb|CB982935.1|CB982935
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30297175|gb|CB973969.1|CB973969
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30297322|gb|CB974116.1|CB974116
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|22008176|gb|BQ793210.1|BQ793210
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|32246234|gb|CD712053.1|CD712053
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|46918466|gb|CN547795.1|CN547795
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30251837|gb|CB969570.1|CB969570
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAAGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71888791|gb|DT037846.1|DT037846
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30125536|gb|CB910875.1|CB910875
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71871681|gb|DT020736.1|DT020736
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30300973|gb|CB977767.1|CB977767
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCGAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71866289|gb|DT015344.1|DT015344
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30136680|gb|CB922018.1|CB922018
EST:     ATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: ATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110715384|gb|EE093369.1|EE093369
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|34544046|gb|CF512278.1|CF512278
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCATCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110716059|gb|EE090707.1|EE090707
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|46918435|gb|CN547764.1|CN547764
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|29783151|gb|CB349136.2|CB349136
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|32456833|gb|CD798007.1|CD798007
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110429400|gb|EC995891.1|EC995891
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30305158|gb|CB981952.1|CB981952
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|77586013|gb|DV222103.1|DV222103
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110410205|gb|EC975883.1|EC975883
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110418381|gb|EC984529.1|EC984529
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|26265143|gb|CA816206.1|CA816206
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|32457822|gb|CD798996.1|CD798996
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110686170|gb|EE063531.1|EE063531
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAAGATACTTTCATTGCA
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCA
EST: gi|30134791|gb|CB920129.1|CB920129
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30129457|gb|CB914796.1|CB914796
EST:     ATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: ATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|34363639|gb|CF405224.1|CF405224
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|37184412|gb|CF603766.1|CF603766
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110407119|gb|EC972714.1|EC972714
EST:     GTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|71886270|gb|DT035325.1|DT035325
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110358476|gb|EC922715.1|EC922715
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|83275978|gb|DV939986.1|DV939986
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|161719251|gb|FC068252.1|FC068252
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110377559|gb|EC942632.1|EC942632
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110425867|gb|EC992262.1|EC992262
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|110362047|gb|EC925554.1|EC925554
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30305842|gb|CB982636.1|CB982636
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30128265|gb|CB913604.1|CB913604
EST:     ATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: ATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
EST: gi|30125009|gb|CB910348.1|CB910348
EST:     GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG                         TGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC
genomic: GTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAGgtacaaaatg ... cacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcagtattatttgaaatggcattactaatccagtttcccttgcacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG
                         tactaat  putative branch site (score: 1)
                                    tttcccttgc  putative PPT
     agtattatttgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaaaatgttttttgtctactaaatttttttcagtattatttgaaatggcattactaatccagtttcccttgcacaatacagTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGTTTGGCCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT