Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttcccgttttattatttgaacagaatttgttattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02140.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA01G13430.1 (Glycine max), 3'ss of exon 9
--------------------------------------gta-agtttcccgttttattatttgaacagaatttgttattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
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gtttgatttcttatctgaatgggatgtaattctttgctgcataatgccattttttactgattattcc--atttgtaatggttttacaacattaattttcgtctgttgccattgggttgattttcctgcagAGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAG
upper sequence: Vv15s0021g02140.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA11G26740.1 (Glycine max), 3'ss of exon 2
----------------------------------------gtaagtttcccgttttattatttgaacagaatttgttattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
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gttggatttcttatctgaatggggtggaattctttgctgcataatgccatttttttactgattattctg--ttagtaattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
upper sequence: Vv15s0021g02140.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ22678 (Selaginella moellendorffii), 3'ss of exon 13
gtaagtttcccgttttattatttgaacagaatttgttattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
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-------------------------gtaagatttttagttttctttca-------------tttatgtctgt-aattttctttttaaacagACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
tgttaat putative branch site (score: 3)
tttcttgtc putative PPT
attgttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttcccgttttattatttgaacagaatttgttattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG