Sequence
atgc intronic sequence ATGC exonic sequence...ctatttatgatttgcaactgaaagggctatttagcttgttatttgaattttataatatgttgctaatggttaaattgatttatttcctttattgtttcagCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os02g58410.1 (Oryza sativa), 3'ss of exon 13
ctatttatgatttgcaactgaaagggctattt-agc--ttgttatttgaatttt-ataatatgttgctaatggttaaattgattt--atttcctttattgtttcagCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
| ||| | ||| || ||| ||| | |||| |||| | | |||| | ||||| ||| || || | | | | | | |||| |||||| || || ||||| ||||||||||| |||||||||||||| |||||||| || ||| |||||||| |||| || || || |||||||
-----agcggttttccactaaatatttagtttcagcattggttagttgattatggataaagcact-ctaattgttttatcttttgcggtgttttctgtatctacagCTTGCTGCTACAGCTGCCCTTGGGCACTCACATCTGGAAGTATGTGAAATCATGTTTGGTGAACTTACATCTTTCCTTGAGGATGTATCATCAGAAACAG
upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G344967_T01 (Zea mays), 3'ss of exon 13
------ctatttatgatttgcaactgaaagggctatttagcttgttatttgaattttataatatgttgctaatggttaaattgatttatttcctttattgtttcagCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
| || | | |||| | || ||| ||| ||| | | | | | |||||| ||| | | || | |||| |||||| || || ||||| ||||||||| |||||||||||||||| |||||||| || || |||| || |||| ||||| || ||||| |
ctgcaacaatattggttttgtg--tagtgaaatcatataga--attaggtgattagtgctgactccaatacactctgaaattggttt--tcaaatgctttctgcagCTTGCTGCTACATCTGCCCTTGGTCACTCACATTTAGAAGTATGTGAAATCATGTTTGGAGATCTGGCATTATTTGTTGAGGAGGTGTCATCAGAAACTG
upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA11G06550.1 (Glycine max), 3'ss of exon 14
ctatttatgatttgcaactgaaagggctatttagcttgttatttg--aattttataatatgttgctaatggttaaattgatttatttcctttattgtttc------agCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
| ||| | || ||| ||||| || | | || || ||| | || | || || || | |||||| | | ||||| ||||||| ||||||||||||||||||| |||||| | |||| ||||||||| ||||| | || ||| ||||||| ||||| ||||||||| || ||||
------cagttttattgatataaaggc-atttaaattttcaactgccaaattttttatccatcacttctg-ttgtctctgtttattgctaacaaggtttctgatatagCATGCAGCCACCATGGCTCTTGGCCGCTCACACTTGGAAGCATGTGAAATCATGTTCAGTGAACTTTCATCTTTTATTGATGAGGTTTCTTCTGAGACAG
upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA19G04970.1 (Glycine max), 3'ss of exon 10
ctatttatgatttgcaactgaaagggctatttagcttgttatttg--aattttataatatgttgctaatggttaaattgatttatttcctttattgtttc------agCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
| ||| | || ||| ||||| || | | || || ||| | || | || || | |||||| | | ||||| ||| ||| || |||||||||||||||| |||||| | |||| ||||||||| ||||| |||| ||| ||||||| ||||| ||||||||| || ||||
------cagttttattgatataaaggc-atttaaattttcaactggcaaattttttatccatcacttctg-tcgtccctgtttattgctaacaaggtttctgatatagCTTGCAGCGACCATGGCTCTTGGCCGCTCACACTTGGAAGCATGTGAAATCATGTTCAGCGAACTTTCATCTTTTATTGATGAGGTTTCTTCTGAGACAG
upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G15680.1 (Arabidopsis thaliana), 3'ss of exon 15
--------------------------------------ctatttatgatttgcaactgaaagggctatttagcttgttatttgaat-----ttta--taatatgttgctaatggttaaattgattta---tttcctttattgtttc--------agCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
| | | | | || | ||| || ||||||| | ||| ||| | | | || || | | ||| || | | ||| | |||| || | |||||||||| || |||||||| || | ||| ||| | |||| |||||||||||||||| ||||||||||||||||||| || ||| |||| || ||||
gtaagttgtttttgtgtctctgcatttttagtctgaagttggtagttttgtcagtcttttaaacctacttgtcttgttaggttaatgtggttttggttgaattttttctcctagataagtttttacaatctttacgttatacttccttgcatgtagCATGCTGCAACTATGGCTCTCGGGCGCTCTCATTTGGAAGCATGTGAAATTATGTTTAGCGAGCTTGCATCTTTCATGGAGGAGATTTCATCAGAGACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttataatatgttgctaatggttaaattgatttatttcctttattgtttcagCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
tttcctttattgtttc CT-rich tract
ttaaattgatttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatttatgatttgcaactgaaagggctatttagcttgttatttgaattttataatatgttgctaatggttaaattgatttatttcctttattgtttcagCATGCTGCCACCATGGCTCTTGGCCACTCACATCTAGAAGTATGTGAAATTATGTTTGGCGAGCTTGCATCTTTCATTGACGAGGTTTCTATGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - -ttgcaac
- - - - - - - - - - - - - - - -tagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga