Sequence
atgc intronic sequence ATGC exonic sequence...taactgaaaatggcaaacacacttttaatttgcatattgactcttatgctaggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os03g48300.3 (Oryza sativa), 3'ss of exon 14
---------------------taactgaaaatggcaaacacacttttaatttgca--tattgactcttatgctaggatagcattaatgattatgaactaat--gacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
| ||| | | | || || |||| ||| | || || ||| |||| | | | | || |||||| ||||||| ||| |||| || |||||||||||||| || || ||| | |||||| |||||| ||||||||||| |||||||| || || |||
gtaagccaatccagaattagctgtctgtgcaagtttattcttctattggcttgccacaattcgcaaacttgttaatttagtcagtttgatcttctatttactcaaccaaattt-atattatctagGTCTGGCCGGGAAAGTGACAGTGATGCTGAGGATTTGGAGCATATTGAAAAGCTTCGTCAAGTCAAAGCAGTACTGGAGGAG
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G05060.1 (Glycine max), 3'ss of exon 16
taactgaaaatggcaaacacacttttaatttgcatattgactcttatgctaggatagca-ttaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
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catttctacgtactagtaatagttgccaccagttttttagtctatatatgtatatgctaatccagagttttgaattaactttatctttgtatat-atttagACCAGATCGAGAAAGCGATAGTGAGGCTGAAGATGTTGAGCATGCTGAAAAGCTTCGTCAAGTTAAAGCAGTTCTTGAGGAG
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA19G02260.1 (Glycine max), 3'ss of exon 12
--taactgaaaatggcaaacacacttttaatttgcatattgactcttatgc-taggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
| | | | | | | || | | | || |||| || | || | | || |||| ||| | || |||| ||||||||| | |||||||||||| ||||| || |||||| |||||||||||||||| |||| ||||||||||||||| ||||| |||
gccatttctacgtactagtaatagttgccaccagttttttagtctatatgtgtatgcta--agccagagttttgaattaactttatctttgtatat-atttagACCAGATCGAGAAAGTGATAGTGAGGCTGAAGATGTTGAGCATGCTGAAAAGCTTCATCAAGTTAAAGCAGTTCTTGAGGAG
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA09G37610.1 (Glycine max), 3'ss of exon 12
---taactgaaaatggcaaacacacttttaatttgcatattgactcttatgctaggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
| | |||||| | || | || | ||| ||| | || | || | || |||| ||| | | | ||||||| |||||| | |||||||||||| ||||| || |||| | ||||| |||||||| || |||||||||||||| ||||||||||||
ttgccattcctgttggcaagtaattttatgggtt---ttctgatcagtatatttttattatttcaagggttttgaaataactatagctgtatatattatgtagACCAGATCGAGAAAGTGATAGTGAGGCTGAAG---TCGAGCACGCTGAAAAGCTCCGTCAAGTTAAAGCTGTCCTTGAAGAG
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA18G49000.1 (Glycine max), 3'ss of exon 14
taactgaaaatggcaaaca---cacttttaatttgcatatt-gactcttatgctagg-atagcat-taatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
|||||| | | || | | | |||||| | ||| | || || || ||| | || |||| ||| | | | ||||||| |||||| | |||||||||||| ||||| || |||| | ||||| ||||||| || |||||||||||||| ||||||||||||
------aaaatgacctattttccagatatgaaaaacatatttaaaccttttattattcatgttatgtaagggttttgaaataactatagctgtatatattatgtagACCAGATCGAGAAAGTGATAGTGAGGCTGAAG---TCGAGCACACTGAAAAGCTCCGTCAAGTTAAAGCTGTCCTTGAAGAG
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT3G01310.1 (Arabidopsis thaliana), 3'ss of exon 15
-----------------------------------------------------------------------------taactgaaaatggcaaacacacttttaatttgcatattgac-----tcttatgctaggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
| || | || | || || |||| | || ||| || | | | | || | | | | || ||| || | | |||||||| ||||| |||||||| ||||| |||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||
gtaccaaaaacatgtcttaatagtaacatgtcttagtccaaatctttcgaaggggattttgtctatcccgttgaagttttcttagaaacaaaggagcatgcttcatttac-tactgatagaaatcgtgtttacagttgaaatc--tagtaagaaccttatggtcttccttttttatctttagACCAGGTCGTGAAAGTGATAGTGATGCAGAAGACCTTGAACATGCTGAGAAGCTTCGGCAAGTTAAAGCAGTCCTTGAAGAG
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 3'ss of exon 15
--taactgaaaatggcaaacacacttttaatttgcatattgactcttatgctaggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
| ||| ||| | || || || | | | | || | | || || | || | |||| || | | | | |||||| | ||| |||||||| ||||| |||||||| ||||| || ||||| || ||||| ||||||||||| || |||||||||
tattgacgaatatgcttcattgacatt-aactagtgatgtaattcatgag-tacaattttaaatctggcaactaacttattgtatttatgtttgatgtttagATCAGGT---GAAAGTGATAGTGATGCAGAAGACCTTGAACACGCTGACAAGCTTCGGCAAGTTAAAGCCGTTCTTGAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgctaggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
aactaat putative branch site (score: 2)
attatgaactaatgac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taactgaaaatggcaaacacacttttaatttgcatattgactcttatgctaggatagcattaatgattatgaactaatgacaaaatttcatattatttagACCTGGTCGAGAAAGTGACAGTGAAGCAGAAGATCTTGAGCATGCTGAAAAACTTCGTCAAGTTAAAGCAGTCCTTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - -gaaaatg
- - - - - - -caaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa