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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgacctctaaacattaatatagatgtctcatattttctttccatgaggtcacattactttaaaacaaaagatgtgtaatttatctgttgtggtttgtctatttacatcagGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG

Basic information

species Vitis vinifera
transcript Vv14s0060g00210.t01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418849|gb|EC985030.1|EC985030
EST:     TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAG                         GCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
genomic: TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgacctc ... tttacatcagGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
EST: gi|45770570|gb|CN006422.1|CN006422
EST:     TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAG                         GCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
genomic: TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgacctc ... tttacatcagGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttaaaacaaaagatgtgtaatttatctgttgtggtttgtctatttacatcagGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
                                         tctattt  CT-rich tract
                  tgtaatttat  TA-rich tract