1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aagaataaaccttgttttcctttccatatgatcaaagcctgcatttttttttcctttctccttttggggttgtatcttgactgcatatttctgcaatcagACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATCATGGCAGAG
species | Vitis vinifera |
transcript | Vv14s0030g00250.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGAACCTGTGGAAAGAGATCACTCCTATTTTGGTGCTCATCGGCCTATTG ACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATCEST: gi|32460667|gb|CD801841.1|CD801841
genomic: TGAACCTGTGGAAAGAGATCACTCCTATTTTGGTGCTCATCGGCCTATTGgtaatgcgac ... ctgcaatcagACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATC
EST: GGAAAGAGATCACTCCTATTTTGGTGCTCATCGGCCTATTG ACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATCEST: gi|110698937|gb|EE077003.1|EE077003
genomic: GGAAAGAGATCACTCCTATTTTGGTGCTCATCGGCCTATTGgtaatgcgac ... ctgcaatcagACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATC
EST: TGAACCTGTGGAAAGAGATCACTCCTATTTTGGTGCTCATCGGCCTATTG ACTTATTCAGCAACATATTCATTANGCATGGCAGGACTACCATGGGTGATC
genomic: TGAACCTGTGGAAAGAGATCACTCCTATTTTGGTGCTCATCGGCCTATTGgtaatgcgac ... ctgcaatcagACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATC
tttttttcctttctccttttggggttgtatcttgactgcatatttctgcaatcagACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATCATGGCAGAG
tcttgac putative branch site (score: 3)
tatttct putative PPT
atatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaataaaccttgttttcctttccatatgatcaaagcctgcatttttttttcctttctccttttggggttgtatcttgactgcatatttctgcaatcagACTTATTCAGCAACATATTCATTAGGCATGGCAGGACTACCATGGGTGATCATGGCAGAG
- - ataaacc
- - - - - - - - - cctttcc
- - - - - - - - - - - - - - - - - -agcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgc