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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcatcttctgttgatatacatagacatacacattcctaattttttgtttcattggctgttcagatcctcagcttttttcattcacgtttatccttcattatttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATAAGCACAGAACAGTTGAAAGACTATGTCTGGAAAACATTAAAAAGTGGCA

Basic information

species Vitis vinifera
transcript Vv13s0156g00180.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 3'ss of exon 14
-----------------------------gtattgcatcttctgttgata-tacatagacatacaca-ttcctaattttttgtttca-ttggctgt-----tcagat-------cctcagctttt------ttcattcacgtttatccttcattatt-tgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATAAGCACAGAACAGTTGAAAGACTATGTCTGGAAAACATTAAAAAGTGGCA
                             || ||  ||||||  |  | | || |    | ||      |  |  | |||| | |   | || |||     |  |||       ||  |  ||           ||||    |  |  || |||||| |  | ||||||||||||||||||||||||||| || || || || ||||||||  | |||   | ||||||||||||||| ||||| |||||||||||||| |||||||
gtatcctcccttgtctatatcttgaataagtcttaaatcttcaatctacaatagagcttcgtaagtggctttttgtattttatctaggtaggttgtgatagtttgatgatacaaccataaattggagaaaacaaattcttagtctttttttattattgtttcaacagGAAGTTTTGCTTTGGATCAAATCAGTCGTAGAGGAATGTGGAGAAGATATATCAAAAGAACAGTTGAAAGAATATGTTTGGAAAACATTAAACAGTGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361418|gb|EC924886.1|EC924886
EST:     CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAG                         GAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
genomic: CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAGgtattgcatc ... ttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
EST: gi|29785895|gb|CB343236.2|CB343236
EST:     CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAG                         GAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
genomic: CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAGgtattgcatc ... ttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
EST: gi|110372355|gb|EC936513.1|EC936513
EST:     CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAG                         GAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
genomic: CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAGgtattgcatc ... ttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
EST: gi|110362967|gb|EC926531.1|EC926531
EST:     CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAG                         GAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
genomic: CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAGgtattgcatc ... ttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
EST: gi|77577886|gb|DV217693.1|DV217693
EST:     CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAG                         GAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA
genomic: CAGCTGCATTAAATGGTCTAGCTGGCCCACTCCATGGTTTGGCTAACCAGgtattgcatc ... ttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcagatcctcagcttttttcattcacgtttatccttcattatttgactacagGAAGTTTTGCTTTGGATCAAATCTGTGGTGGACGAGTGTGGAGAGAACATAAGCACAGAACAGTTGAAAGACTATGTCTGGAAAACATTAAAAAGTGGCA
                                           atttgac  putative branch site (score: 4)
                ttttttcatt  TA-rich tract