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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatttgtttggaaagtttttaatgtacttagcttgagtattatgatcttgatttatttctcttacttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC

Basic information

species Vitis vinifera
transcript Vv13s0084g00600.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 3'ss of exon 13
gtatgtatttgtttggaaagtttttaatgtacttagcttgagt-attatgatcttgatttatttctcttacttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC
||||||     |     |    |||| ||| |||  ||||      |||    |  | | |    | | |  |  ||  | |||||||| || || |||||||| ||||||||||| ||||||||||| || |||||||||||| |||| || || |
gtatgttaaactaccttaccaatttattgttcttgtcttgctccgatattgcttgtactgaaaattatcatgt--agGTCATGGGGTTTCCTCTGTCCTGTTCATACACCTGATGGAGAGCCTTGTGGTTTACTGAACCATATGACTTCCACATGCC

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G23500.1 (Glycine max), 3'ss of exon 9
gtatgtatttgtttggaaagtttttaatgtacttagcttgagtattatgatcttgatttatttctct-tacttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC
||  ||| || |||  | |||    |   |   |   |    || |||  |   |  | |||| | | ||     ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| |||||| |||  ||| || 
gttagtacttttttacatagtcgacagattgtgtttttgttataatatccttacgcatgatttttatatataaatagATCTTGGGGTTTTCTTTGCCCTGTGCACACACCTGATGGAGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTAGTA

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 18
gtatgtatttgtttggaaagtttttaa--tgt-acttagcttgagtattatgatcttgatttatttctct-tacttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC
||  ||| || | |  | | |   ||   ||| | || | |  | |||  | | ||   ||| ||| | | ||     ||| ||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| |||| |||||| |||  ||| || 
gttagtacttttatacataatcggtagattgtgattttgttataatatacttacctatgtttttttatatatataaatagATCTTGGGGTTTTCTCTGCCCTGTGCACACACCTGATGGAGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTAGTA

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 3'ss of exon 15
---------gtatgtatttgtttggaaagtttttaatgtacttagcttg----agtattatgatcttga---tttatttctctta-------cttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC
          |   | |||   ||  ||    |  |||| || |   ||    |  ||| |  |||| |   |||   ||| |||       |||  ||| |||||||||||||||||||||||||||| ||||||||    ||||||||||| ||||| |||||| ||  |||| | |
gtaggttctttcactttttacctgtcaaacactacatgtgctgatgctgtcccaaaattgtagtcttcacatttttcctcttttattgttatcttgtagATCTTGGGGTTTTCTTTGCCCTGTTCACACTCCTGATGGAACACCTTGTGGATTACTGAATCATATGACTCGTACTAGCC

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ35146 (Selaginella moellendorffii), 3'ss of exon 15
gtatgtatttgtttggaaagtttttaatgtacttagcttgagtattatgatcttgatttatttctcttacttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC
                        ||| |    |   |    || |    ||    || | ||     |  |  ||| | ||||| ||||||||||| |||||||| || ||||| || |||||||| ||||| |  ||| |    ||    ||  
-----------------------gtaaggacactgattc---tactccagtccct-ttaactttatggatgtgtagATCGTGGGGATTTCTTTGCCCCGTTCACACTCCCGATGGTGAACCTTGTGGGTTGCTCACTCATTTAAGCTCATTGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatgtacttagcttgagtattatgatcttgatttatttctcttacttccagAGCTTGGGGTTTTCTTTGCCCTGTTCACACACCTGATGGGGAGCCTTGTGGATTGCTGAACCATATGGCTTCTACTTGTC
                                          ctcttac  putative branch site (score: 3)
                                   tttatttctcttactt  CT-rich tract
                     tattatgatcttgatt  TA-rich tract