1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atacatgatgagaagaatctgttagttaacatttttgccttagaaagcactaacattttataaatttgtggtaacaaaacttggaaacattcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAGAACCAGGCAAGCTGTGCAATGAGAAGACATGTTTTTCATGCAATAGCCT
species | Vitis vinifera |
transcript | Vv13s0074g00450.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG GTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAGEST: gi|110386925|gb|EC951560.1|EC951560
genomic: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAGgtaaggaaaa ... tcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAG
EST: ACGAGAACNTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG GTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAGEST: gi|110693473|gb|EE069745.1|EE069745
genomic: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAGgtaaggaaaa ... tcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAG
EST: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG GTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAGEST: gi|110419355|gb|EC985574.1|EC985574
genomic: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAGgtaaggaaaa ... tcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAG
EST: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG GTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAG
genomic: ACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAGgtaaggaaaa ... tcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAG
agcactaacattttataaatttgtggtaacaaaacttggaaacattcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAGAACCAGGCAAGCTGTGCAATGAGAAGACATGTTTTTCATGCAATAGCCT
taacattttataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacatgatgagaagaatctgttagttaacatttttgccttagaaagcactaacattttataaatttgtggtaacaaaacttggaaacattcatgactagGTGAAACTGCAAATTCAAGTCAACCACCAGAAAGGAGGTGTGAGTCCCAAGAACCAGGCAAGCTGTGCAATGAGAAGACATGTTTTTCATGCAATAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -catgatg
- - - - - agaagaa
- - - - - - - - - ctgttag
- - - - - - - - - - - - - - - - - -tgcctta
- - - - - - - - - - - - - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaca