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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtacccttgttttcataatttagcattcaatacttcaattaatttatgctttattggcatttcagtacttaatgctttaatgggtacaatgggcttcatgtctcaacaatgttatatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG

Basic information

species Vitis vinifera
transcript Vv12s0121g00080.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 14
gtgtacccttgttttcataatttagcattcaatacttcaattaatttatgctttattggcatttcagtacttaatgctttaatgggtacaatgggcttcatgtctcaacaatgttatatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                      ||  | ||| | |||     | |||    |||  |   |   || || |||    |||| | |    ||   ||||  | | | |   |   |  ||   |    || ||| | | ||| ||| | || ||||||||||| ||  ||||||| ||||||||||| || |||||||| || |||||||| || || ||||| || ||||| ||||| |   
------------------gtcctactactca-tccttgtccaagttt---ttttccttagaccccattaatta----tttagtagcatgaaaatgctttgt-tgttagtgagaatgaata-atgaatatacttgtggattg-cagGTGCTGGATGCTGATAATGGGCGTCGGTTGGAGAGTTCTACTGGTCGTGTAGCTACACGAGATATGGTGCAATTTGTGCCTATGAGAGAAGTACAAA

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 14
gtgtacccttgttttcataatttagcattcaatacttcaattaatttatgcttta-ttggcatttcagtacttaatgctttaatgggtacaatgggcttcatgtctcaacaatgttatatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                                   | | | ||||   ||    | ||    |       |   ||   ||| |  |||  |||    |  | | |    |  |  | |||  |    || ||| | | ||| ||| | || ||||||||||| ||  ||| ||| ||||||||||| || |||||||| ||  ||||||| ||||| ||||| || ||||| ||||| |   
----------------------------------gtcctactaatccttgtccaagtttttttccttaggccccattaattatttagtatcatgaaaatgctttgttgttagggaga-atgaatatatatacttgtggattg-cagGTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAA

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgtacccttgttttcataatttagcattcaatacttcaattaatttatgctttattggcatttcagtacttaatgctttaatgggtacaatgggcttcatgtct-caacaatgttatatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                                                        |   | ||  ||  ||      |||     || |   | ||   ||     |  ||   |  | |||   |||   |     | |  ||||| |||||||||||||| ||| | ||||||||||||||||| || ||  |||| || || || || || || ||||| || ||||  ||  | | | 
-------------------------------------------------------gtacaagttttgt-tttgtcaagttaggttttatatctgtctctttgcaaatagtaaacatgca-gtgacttgaccttgtaaatatttcagATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgggcttcatgtctcaacaatgttatatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                                ttctgat  putative branch site (score: 3)
                                      ttcttatt  CT-rich tract
                   aatgttatat  TA-rich tract