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...taaaatatttgggtttgaaaccatttattgaacaccttatcttaacctagcttttaatagttcatctactaataatgcctaatagccatccttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAAGTTAGACGAAGTGCAACTTAATCTCGGTTTCTTTTTCCTTTTTGCCTT
species | Vitis vinifera |
transcript | Vv12s0057g01200.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|30130059|gb|CB915398.1|CB915398
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAEST: gi|110368276|gb|EC932247.1|EC932247
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|110361968|gb|EC925474.1|EC925474
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|26259676|gb|CA810739.1|CA810739
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|110361336|gb|EC924802.1|EC924802
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|110362059|gb|EC925566.1|EC925566
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|110357331|gb|EC920800.1|EC920800
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GGCAGTTATGAGTGCAEST: gi|32246227|gb|CD712046.1|CD712046
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|33403297|gb|CF208924.1|CF208924
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAEST: gi|110723122|gb|EE100072.1|EE100072
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: GTGGTGCATCANCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG GCCAGTTATGAGTGCAAGAGCCTGGGAGAGATGAATCTCCATCATCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
cctagcttttaatagttcatctactaataatgcctaatagccatccttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAAGTTAGACGAAGTGCAACTTAATCTCGGTTTCTTTTTCCTTTTTGCCTT
ccatcctt CT-rich tract
ttttaatagttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatatttgggtttgaaaccatttattgaacaccttatcttaacctagcttttaatagttcatctactaataatgcctaatagccatccttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCAAGTTAGACGAAGTGCAACTTAATCTCGGTTTCTTTTTCCTTTTTGCCTT
-aaaatat
- - - - - gggtttg
- - - - - - - - -aaaccat
- - - - - - - - - - - - - - - -acacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccatc