Sequence
atgc intronic sequence ATGC exonic sequencegtaacaaatactatcatagatgctactgtactactattctataagcttatcatattgctaagaacactacctgattctgctctctagAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G070045_T01 (Zea mays), 3'ss of exon 9
gtaacaaatactatcatagatgctactgtactactattctataagcttatcatattgctaagaacactacctgattctgctctctagAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
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-----gtacttctttctagat-ctgttgaa-tgtagatgaacttaaacatgagaatcatgtatttttttcttg-ttttcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTACAGAGGATGGAAAACTATATACACCTGCAGCAGTGGATCTATTCAGAA
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G579509_T01 (Zea mays), 3'ss of exon 4
gtaacaaatactatcatagatgctactgtactactattctataagcttatcatattgctaagaacactacctgattctgctctctagAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
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-------gtacttctttctagatttgtggaatgtag----atgaacttcaacaagaatcatgtattgtttcatgttttcttctgtagAAATGGTACAATAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTAGAGAGGATGGAAAACTATATACACCTGCAGCAGTGGATCTATTCAGAA
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 15
gtaacaaatactatcatagatgctactgtactactattctataagcttatcatattgctaagaacactacctgattct---gctctctagAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
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-------gtaatcctaaatatcttgtggtgtttct--tgggtgacttctttgtcatacataagactaagctttattcttaatgtttatagAAATGGTACCTGAATATTTTGGAGGCTGATAGAACACAGCCCCCTAAGAAAACTGAAGATGGGAAGCTATATACCCCAGCTGCTGTTGATCTCTTCAGGA
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ08885 (Selaginella moellendorffii), 3'ss of exon 13
gtaacaaatactatcatagatgctactgtactactattctataagcttatcatattgc-taagaacactacctgattctgctctcta---gAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
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-------------------------------------gtaagaaatgtaccaccttgcgtgctcttgtttcatgcttacgtgctgtatcagAAATGGTACACCAACATCCTGGAGGCGGATAAAGTGCAGCCGCCGAAGAAAACAGATCAAGGAAAGCTATGGACCCCAGCTGCTGTGGATTTGTTCAGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actattctataagcttatcatattgctaagaacactacctgattctgctctctagAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
acctgat putative branch site (score: 4)
ttctgctctct CT-rich tract
ttatcatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacaaatactatcatagatgctactgtactactattctataagcttatcatattgctaagaacactacctgattctgctctctagAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCACCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT