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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaattgacagacttgaccatttagcgacttcggccttcttacttattattgcttcaaccgactgacctgatttatgttttcatttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG

Basic information

species Vitis vinifera
transcript Vv11s0052g00880.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00880.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 14
gttt-taattgacagacttgaccatttagcgacttcggccttcttacttattattgcttcaaccgactgacctgatttatgttttcatttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG
|||| ||||  ||    |   | || |    | |    | | | | | |  || |    |||     |    || ||| | ||| || || |  ||||||||| ||||| |||||||  ||||| ||||| ||  | ||  | |||||||||||||||||||||||  |||||
gtttataatctacttgatattctatcttctaattctttcttccatccat-ctactatgccaattatttattttgttttttatttgcacttta--gGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32267884|gb|CD717043.1|CD717043
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|110695029|gb|EE072582.1|EE072582
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTANGGGTTTCCTACAA                         GAAAGATTTGCTCTTNAAGAAGCTGGAGCAGAACTANGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|27582064|gb|CB004759.1|CB004759
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|32270252|gb|CD719411.1|CD719411
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|30324587|gb|CD007849.1|CD007849
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|30326071|gb|CD009333.1|CD009333
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|352774216|gb|FQ474739.1|FQ474739
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|30300181|gb|CB976975.1|CB976975
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|110699884|gb|EE077290.1|EE077290
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|71864604|gb|DT013659.1|DT013659
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|30322494|gb|CD005756.1|CD005756
EST:     CTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: CTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
EST: gi|32271899|gb|CD721058.1|CD721058
EST:     TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTACAG                         GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA
genomic: TCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattg ... catttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttacttattattgcttcaaccgactgacctgatttatgttttcatttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG
                                         ttttcatttc  CT-rich tract
                                  atttatgttttcattt  TA-rich tract