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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcagGTTGGACTTGAGCTTGTTCCTAGGGACTATGATATGGATATTGCATCTCCTTTTAGGAAGTCAGATATTATAAGCATGGTCCCTGTCTATAAG

Basic information

species Vitis vinifera
transcript Vv11s0037g00840.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G24430.1 (Glycine max), 3'ss of exon 11
gtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcagGTTGGACTTGAGCTTGTTCCTAGGGACTATGATATGGATATTGCATCTCCTTTTAGGAAGTCAGATATTATAAGCATGGTCCCTGTCTATAAG
|||  | ||   | || |||  |   || |      | | |||    ||   |||  || || ||||    ||| |||    || |||  ||||| || |||||||| ||||||||||||||||| |||||||  |||||||||||||| ||| |||||||| |||||||||||||  | ||||||
gtaaat-gaaaggcccactctgtaatacattgatattgatcactttatgc-cactgttaattcaatt----aagagaa----tcctttaacagGTGGGGCTTGAGCTGGTTCCTAGGGACTATGAAATGGATACAGCATCTCCTTTTAGAAAGACAGATATTGTAAGCATGGTCCCCATATATAAG

upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 12
gtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcagGTTGGACTTGAGCTTGTTCCTAGGGACTATGATATGGATATTGCATCTCCTTTTAGGAAGTCAGATATTATAAGCATGGTCCCTGTCTATAAG
|||   |||   | || |||  |   || |      | | |||    ||   |||  | ||| ||||    ||| ||        |||  ||||| || |||||||| |||||||||||||||||||||||||  ||| |||||||||  ||| |||||||| |||||||||||||  | ||||||
gtaaaatgaaaggcccactctgtaatacat------tgatcactttatgc-cactgttgtttcaatt----aagaga--------tttaacagGTGGGGCTTGAGCTGGTTCCTAGGGACTATGATATGGATACAGCAACTCCTTTTAAAAAGACAGATATTGTAAGCATGGTCCCCATATATAAG

upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT4G28080.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttt-taagtgaaatcatctttt--ctcagGTTGGACTTGAGCTTGTTCCTAGGGACTATGATATGGATATTGCATCTCCTTTTAGGAAGTCAGATATTATAAGCATGGTCCCTGTCTATAAG
             |  |   ||||  | |  |  |  |     |   ||| ||  |    |   ||| |  || ||   || |    |    |||||||||||| |||||||||||||  |||||||| ||||| |   | | |||||||| |||||  |||||||| || ||||| ||||| ||||||
-------------gtttgcaactgtcagtgaaatttgttttcaataatgactatctaacctgagattctcatatgttgcattactcatcggttcagGTTGGACTGGAGCTTGTTCCTAAAGACTATGAGATGGACACGTCTTATCCTTTTAAGAAGTTTGATATTATCAGTATGGTTCCTGTGTATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcagGTTGGACTTGAGCTTGTTCCTAGGGACTATGATATGGATATTGCATCTCCTTTTAGGAAGTCAGATATTATAAGCATGGTCCCTGTCTATAAG
                     ttttaat  putative branch site (score: 3)
                                         tcatcttttctc  putative PPT
           aatacttctattttaa  TA-rich tract