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...ttatattactttggtttgtgaaacttactcattgggtttctgataataggaattatgtctgatttcttatgacaacatattctatttatatgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAG
species | Vitis vinifera |
transcript | Vv10s0003g01640.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACG GGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAEST: gi|351013609|gb|FQ429750.1|FQ429750
genomic: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACGgtattgccat ... tgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
EST: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACG GGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAEST: gi|110724595|gb|EE100559.1|EE100559
genomic: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACGgtattgccat ... tgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
EST: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACG GGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAEST: gi|161721461|gb|FC070452.1|FC070452
genomic: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACGgtattgccat ... tgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
EST: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACG GGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAEST: gi|351019257|gb|FQ429417.1|FQ429417
genomic: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACGgtattgccat ... tgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
EST: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACG GGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAEST: gi|110361661|gb|EC925153.1|EC925153
genomic: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACGgtattgccat ... tgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
EST: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACG GGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
genomic: AGGAGCCTGCTGGAGCTGATCTCATTTTTGATCAAGGAGACAATATAACGgtattgccat ... tgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAA
ataggaattatgtctgatttcttatgacaacatattctatttatatgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAG
gtctgat putative branch site (score: 4)
aacatattctatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatattactttggtttgtgaaacttactcattgggtttctgataataggaattatgtctgatttcttatgacaacatattctatttatatgatctacagGGCAAGGTATCTAGGGAAGAGATTGCTCGCATTTGCATTGCTGCTCTAGAAAGCCCTTATGCATGTGACAAGACATTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - aatagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca