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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatccttgataattatgtgacaaagccttgttgtttgatcattttttttgggttctttatgtaatttgtgtgatcttgtgtccaaccatgcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGAGCAACCACTGGGTATTTTACCCCATCAAATTCGAGGTTCCCTTGCTCAG

Basic information

species Vitis vinifera
transcript Vv10s0003g01150.t01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352773900|gb|FQ473032.1|FQ473032
EST:     TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGG                         GATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
genomic: TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGGgtaaatcctt ... gcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
EST: gi|110383875|gb|EC948279.1|EC948279
EST:     TTTAGTAGGAATCCTACATCATCCTCATGG                         GATATTTGCGGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
genomic: TTTAGTAGGAATCCTACATCATCCTCATGGgtaaatcctt ... gcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
EST: gi|352773017|gb|FQ470632.1|FQ470632
EST:     TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGG                         GATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
genomic: TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGGgtaaatcctt ... gcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
EST: gi|352764553|gb|FQ472910.1|FQ472910
EST:     TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGG                         GATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
genomic: TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGGgtaaatcctt ... gcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
EST: gi|352778258|gb|FQ465568.1|FQ465568
EST:     TCGGCTCTTGCTGTAGAGCTTTTAGTGGGAATCCTACATCATCCTCATGG                         GATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA
genomic: TCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCCTACATCATCCTCATGGgtaaatcctt ... gcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgggttctttatgtaatttgtgtgatcttgtgtccaaccatgcatgtgtagGATATTTGCAGAAGGCGATATTGCAAACTCTAGCAGCAATGGAATCAATGAGCAACCACTGGGTATTTTACCCCATCAAATTCGAGGTTCCCTTGCTCAG
        ttctttatgtaattt  TA-rich tract