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...agagaaatgaacatgggggatcttgctctgtgcatgcattattggaatattatcatctttctacaaaggcctgacattatttggttatttgacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCACATTGTCAATATCCAAACTGTCGCAAAGTGAAGGGCCTTTTCCGCCATG
species | Vitis vinifera |
transcript | Vv09s0054g01780.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCAEST: gi|110420240|gb|EC986505.1|EC986505
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCAEST: gi|34549013|gb|CF517245.1|CF517245
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCAEST: gi|110731919|gb|EE106752.1|EE106752
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCAEST: gi|34542459|gb|CF510691.1|CF510691
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCAEST: gi|349827654|gb|FQ422522.1|FQ422522
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCAEST: gi|110376365|gb|EC941423.1|EC941423
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
EST: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAG CTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
genomic: CCGATCGTGATGCACAGAATAAAGAAGCAAGGCAGCTACGAGTTTTACAGgtactgcatg ... gacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCA
aatattatcatctttctacaaaggcctgacattatttggttatttgacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCACATTGTCAATATCCAAACTGTCGCAAAGTGAAGGGCCTTTTCCGCCATG
attatttggttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagaaatgaacatgggggatcttgctctgtgcatgcattattggaatattatcatctttctacaaaggcctgacattatttggttatttgacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCACATTGTCAATATCCAAACTGTCGCAAAGTGAAGGGCCTTTTCCGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - aaatgaa
- - - - - - - gggggat
- - - - - - - - - - -cttgctc
- - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgaca