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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattttgagcattcttcagtttctgatgtttatgtataattctagtttgtttccacctatctggaaaaaaaaagaaaaaaagaaaaaaaaaggaggtgggttgttgggggaaaggggtaggtggtgttgtgggttgtcttttagtttgatttgatggagaaaatcttatatgctgttactgggtggcactgcagATATGCGGAATGTACCTCAGCTGCAATTCAAGCATTGACATCGTTCAAGAAATTATATCCTGAGCATAGGAGGCATGAAATAGAAAATTGTATTTCTAAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01090.t01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33403610|gb|CF209237.1|CF209237
EST:     TTAATCAATCCTGCTGAAACTTTTGGTGACATTGTCATTGATTATCC                         ATATGCGGAATGTACCTCAGCTGCAATTCAAGCATTGACATCGTTCAAGAA
genomic: TTAATCAATCCTGCTGAAACTTTTGGTGACATTGTCATTGATTATCCgtaagatttt ... ggcactgcagATATGCGGAATGTACCTCAGCTGCAATTCAAGCATTGACATCGTTCAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtttgatttgatggagaaaatcttatatgctgttactgggtggcactgcagATATGCGGAATGTACCTCAGCTGCAATTCAAGCATTGACATCGTTCAAGAAATTATATCCTGAGCATAGGAGGCATGAAATAGAAAATTGTATTTCTAAG
         atttgat  putative branch site (score: 5)
                  agaaaatcttatat  TA-rich tract