Sequence
atgc intronic sequence ATGC exonic sequence...gttctttttcttatcagaaaacactccctgtgaattcaaattaaacatcattctaactatctgggtgaaaatcctgctgatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G032163_T01 (Zea mays), 3'ss of exon 14
---gttctttttcttatcagaaaacactccctgtgaat-tcaaattaaacatcattctaactatctgggtgaaaatcctgctgatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
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gaacttgtacgtgtggtgcagatatacttttttcctgtgttaaatggtgccatgtccttgtcaatagcttcatgacgct-ctaacaggattg--ctggtgc-agGATGTGAAGGGTCCACAAACCATTGCTTTCAATTTGCCCAATGATGAAAGGATTGTGAATGAACGAGGAACTTCCATGGTTATGCTCAAAAACATTTCAG
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G04150.1 (Glycine max), 3'ss of exon 14
gttctttttcttatcagaaaacactccctgtgaattcaaattaa--acatcattct---aactatctgggtgaaaatcctgctgatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
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tccatatgttcttcctaataaaattcacaagggattgcaatgcagtactttatgcttaaaactatccaaccggaaattttac-----attgatgaattatttcagGATGTCAAGGGACCACAAACTCTTGCTTTCAATCTTCCAAATGATGAGCGTATTGTAAAAGACCGGGGATCATCAATGGTCATGCTTAAGAATGTTTCAG
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA20G08880.1 (Glycine max), 3'ss of exon 14
gttctttttcttatcagaaaacactccctgt-gaattcaaattaaacatcattctaactatctgggtgaaaatcctgctgatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
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---gttctttttaataaaattcacaagggattgaaatgcagtaatttatgcttaaaactatccaaccggaaattttac-----attgaagaattatttcagGATGTCAAGGGACCACAAACTCTAGCTTTCAATCTTCCAAATGATGAGCATATTGTAAAAGACCGGGGATCATCAATGGTCATGCTTAAGAATGTTTCGG
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G79690.1 (Arabidopsis thaliana), 3'ss of exon 14
gttctttttcttatcagaaaacactccctgtgaat-tcaaattaaacatcattctaactatctgggtgaaaatcctgct--gatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
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-------------gtaagttcccctcggcatccatctgagataggaaaaggaagaaaatgtattgccgttattcatggttcacttgtttcttgattgtgacagGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAATCGTGAAGGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcattctaactatctgggtgaaaatcctgctgatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
atgatttcaaatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctttttcttatcagaaaacactccctgtgaattcaaattaaacatcattctaactatctgggtgaaaatcctgctgatgatttcaaatttatgccagGATGTGAAGGGTCCCCAAACTGTTGCATTCAATTTACCAAATGATGAGCGTATAGTAAAAGACCGAGGAACATCAATGGTCATGCTTAAAAATGTTTCGG
- - - - - - - cagaaaa
- - - - - - - - - - -cactccc
- - - - - - - - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat