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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATGGAATGAAAGTGAAGGGGCAGTTAAAAGGACCTACCAAGGGTTCAGGAAA

Basic information

species Vitis vinifera
transcript Vv09s0002g08370.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 15
gttggtttactcttacccatttgctagtgctacaagtcct-catcatttgttggtgtgccaatcaga--attattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATGGAATGAAAGTGAAGGGGCAGTTAAAAGGACCTACCAAGGGTTCAGGAAA
      | |    ||  | |  |||||  || |  ||  |   |    | ||| ||||| | | | |  ||  ||  |    ||    | ||  |  | || |||  ||   ||  | | |     |||||||||||||||||||| ||||| || |||||||| || |  || ||||||||||||||||||||||| || ||||||||||| || ||||| ||  | || 
-----gtaatatatattc-tcagctaggtctccttgtgttattttgagtcttgctgtgc-agttaaattatactttcttttcataccaacgtacaaatatttttt--ggctatgactatac-----tacagGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCCATTGTTGAATGGAATGAAAGTGAAGGAGCTGTTAAAAGGACTTATCAAGGATTTCGCAAG

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA15G00880.1 (Glycine max), 3'ss of exon 14
gttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATGGAATGAAAGTGAAGGGGCAGTTAAAAGGACCTACCAAGGGTTCAGGAAA
               ||||| | ||    ||     | ||  |  | |     | | | |        | |||||   ||||||       || |||| ||| ||   |   || ||     ||| || |||||||||||||| ||||||||||||| ||| || | ||| ||||| ||||||||||||||||| || || |||||||| || ||||| ||  |||||
-------------gtcccatatactca-actgtggctacttgtattattgaattatactatctg----ttttgatc--tatttttgcccaaacatttttttttggcctgaatgtatt-----ttatagACTCTTTTCATGTGGGACAAGTAAGGATGCGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGGAAA

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 15
gttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATGGAATGAAAGTGAAGGGGCAGTTAAAAGGACCTACCAAGGGTTCAGGAAA
    |||||    ||||||    | |  |||||  ||    || |||   |  | | | |        | |||||   ||||||       || ||||||||  ||   ||  | |     |||| || ||||| |||||||| ||||||||||| ||||| || | ||| ||||| ||||||||||||||||| || || |||||||| || ||||| ||  |||||
----gtttata--taccca---accatggctacttgt----attattgaat--tatactatctg----ttttgatc--tatttttgctcaaacattttctttttggct-tgaatgtat---tttatagACTCTTCTCATGTGGGACAAGTAAGGAAGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGGAAA

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ30926 (Selaginella moellendorffii), 3'ss of exon 14
gttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATGGAATGAAAGTGAAGGGGCAGTTAAAAGGACCTACCAAGGGTTCAGGAAA
                                                                           |  |  ||  |  |||    ||||  ||   |        ||  | ||| |||  | ||||| ||||||||||| |||||||| || || | | | || || ||||||||||||||||| ||| ||||||  |||||| | || ||  |||||
---------------------------------------------------------------------------gtttgcttcaacctttggtatttccatcacat------cctttgtttttccagATTGTTTTCTTGTGGAACAAGCAAGGATGGTGAGTCTTTTCTTGTGGAGTGGAATGAAAGTGAAGGTGCAATTAAAAACACCTACAATGGTTTTCGGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857073|gb|DT006128.1|DT006128
EST:     GCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAG                         GCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATG
genomic: GCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttac ... atatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATGGAATGAAAGTGAAGGGGCAGTTAAAAGGACCTACCAAGGGTTCAGGAAA
                                        ttttcat  CT-rich tract
     tattttgatgttta  TA-rich tract