1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tggtatagaaatttcatatggttacctctccataacagtcaattatacccaaagctccatctgcactgactttctcttcttgatgtctttatgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGGTTATGGAGAATCTTCTGTTTGAAAGGACTGTGACGAGGCTTTATGATC
species | Vitis vinifera |
transcript | Vv09s0002g00380.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|351023163|gb|FQ432546.1|FQ432546
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|351037296|gb|FQ457129.1|FQ457129
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349813704|gb|FQ413938.1|FQ413938
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349813666|gb|FQ413900.1|FQ413900
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349811550|gb|FQ409546.1|FQ409546
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349823260|gb|FQ400239.1|FQ400239
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|30128919|gb|CB914258.1|CB914258
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349821544|gb|FQ408103.1|FQ408103
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGGAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349809534|gb|FQ414424.1|FQ414424
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|352791391|gb|FQ480970.1|FQ480970
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349814303|gb|FQ398743.1|FQ398743
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349807510|gb|FQ401503.1|FQ401503
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349813926|gb|FQ414160.1|FQ414160
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349811257|gb|FQ406245.1|FQ406245
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349816603|gb|FQ399592.1|FQ399592
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349814433|gb|FQ398873.1|FQ398873
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349815793|gb|FQ400949.1|FQ400949
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGEST: gi|349819795|gb|FQ404517.1|FQ404517
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
EST: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAG GTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
genomic: TCAGCACGGGAAGTCCAACATGCTTGGCAAAGATTCTGGGGATTTACCAGgtatttcctg ... atgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTG
tacccaaagctccatctgcactgactttctcttcttgatgtctttatgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGGTTATGGAGAATCTTCTGTTTGAAAGGACTGTGACGAGGCTTTATGATC
tctttat CT-rich tract
tttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtatagaaatttcatatggttacctctccataacagtcaattatacccaaagctccatctgcactgactttctcttcttgatgtctttatgttggaagGTTACGTCCAAGCATCTGAAAGGAGGGAAGGAATCAAGGATGGATCTTCTGGTTATGGAGAATCTTCTGTTTGAAAGGACTGTGACGAGGCTTTATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - atagaaa
- - - - - - - - - - - - -ctctcca
- - - - - - - - - - - - - - - - - - - - - - - -cccaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatc