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...aaatatatggaagaaattacggtctgataagggctctgtttgttgacagtgcttcatgtgttttatgcattactcaatccctttattttgcaacatacagGACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGCATTCTCAGTTAAACCACTTGAATTGGAGGAAGTTTTTGCAACAGTACCT
species | Vitis vinifera |
transcript | Vv09s0002g00100.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGTGCACAGGCTATTGTAAAG GACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGCEST: gi|352778350|gb|FQ465660.1|FQ465660
genomic: TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGTGCACAGGCTATTGTAAAGgtaacttccc ... caacatacagGACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGC
EST: TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGTGCACAGGCTATTGTAAAG GACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGCEST: gi|110392879|gb|EC957437.1|EC957437
genomic: TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGTGCACAGGCTATTGTAAAGgtaacttccc ... caacatacagGACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGC
EST: TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGTGCACAGGCTATTGTAAAG GACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGC
genomic: TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGTGCACAGGCTATTGTAAAGgtaacttccc ... caacatacagGACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGC
acagtgcttcatgtgttttatgcattactcaatccctttattttgcaacatacagGACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGCATTCTCAGTTAAACCACTTGAATTGGAGGAAGTTTTTGCAACAGTACCT
tgttgac putative branch site (score: 3)
tccctttattttgc putative PPT
tttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatatggaagaaattacggtctgataagggctctgtttgttgacagtgcttcatgtgttttatgcattactcaatccctttattttgcaacatacagGACTATGAATTGCTTGTTGCTCAGGGAGAACAAAAGTTGGCCGAGGTCAGCATTCTCAGTTAAACCACTTGAATTGGAGGAAGTTTTTGCAACAGTACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
aaatata
- - - - ggaagaa
- - - - - - - - - - - - - - - - - - - - tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat