Sequence
atgc intronic sequence ATGC exonic sequence...atccagctacaagcatgaccattggcattcaccaactcctttgaagtttacagaaccaaaacttgttcgtgaactttctaagctttacatcattttgcagGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 3'ss of exon 12
-----atccagctacaagcatgaccattggcattcaccaactcctttgaagtttacagaaccaaaacttgttcgtgaactttctaagctttacatcattttgcagGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAG
| ||| || || || || ||| || | || | | | | || | || | || | | | ||| | | | ||||| || | || ||||||| |||||| | |||||||||| ||||||||||| ||| ||||||| |||| ||| ||||| || ||||| | || ||
gccaaaggcagatagaaatccagtgat-aacacaattgaacaactcagcagcat-taaagctgaatgatatttttaaattgttcatttttt---ttacatgacagGAGGTCATAGACATAATGACGGAATCCTTATATGACAAGTGTGTTGATGAGCACGGTGTTGTGGACTTTGCTCGAAGTGGTGGGATGAGCAATCAAAAGC
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G163658_T01 (Zea mays), 3'ss of exon 13
---atccagctacaagcatgaccattggcattcacca--actcctttgaagtttacagaaccaaaacttgttcgtgaactttctaagctttacatcattttgcagGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAG
||| | | | ||| || || | ||| || || | | ||| || ||| || | || || ||| | ||| |||| | |||||||||||| || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| |||||| |||||| || |||||||| || | |||
tgcatctattttccagccaaacacgtgtctgtcaacagaacacaatctaagcagcatgatccataatattttaagtaatgttc--aactt---gtcatgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAACATGGTTTTGTTGATTTTACTCGGAGCGGTGGAATGAGCCAACCGAAGC
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 13
--atccagctacaagcatgaccattggcattcaccaactcctttgaagtttacagaaccaaaacttgttcgtgaactttctaagctttacatcattttgcagGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAG
||| | ||||||| ||| ||||| | || | ||| || | | | | | ||||| | | | | | |||| |||||||| ||||| |||||||| ||||| ||||||| ||| | ||||| |||||| |||||||||||||||||||||| ||||||||||| || || |
aaggtaagcagctagcatgaa-atttcaattcaa-atctgcattgttgtgatcttggcttggtcaactgtcttgacttttttcgttggatttgcttttacagGATGTGGTTGAAATAATGAAAGAATCGTTGTATGATAAGCTTATAGATGAACATGGTGTTGTGGATTTTGGTCGGAGTGGAGGAATGAGTCAACAAAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttacagaaccaaaacttgttcgtgaactttctaagctttacatcattttgcagGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAG
tcatttt CT-rich tract
atcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atccagctacaagcatgaccattggcattcaccaactcctttgaagtttacagaaccaaaacttgttcgtgaactttctaagctttacatcattttgcagGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAG
- ccagcta
- - - - - - gcatgac
- - - - - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaac