Sequence
atgc intronic sequence ATGC exonic sequencegtatttttctttccccagttctctttggaaattttcttttcatagcatcattttttgtcctaactcaagaatggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA10G31880.1 (Glycine max), 3'ss of exon 15
gtatttttctttccccagttctctttggaaattttcttttcatagcatcattttttgtcct-aactcaagaatggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
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------gtattgttatatttctgcgtaagattatgttctccctttcttctggtattgtgatgaactcagtcatgatttgtccaaaat--------acagGGGCAAAGCAACCAATCTATCTTGTCAATGCTGATGATGTTGGTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatttttctttccccagttctctttggaaattttcttttcatagcatcattttttgtcctaactcaagaat--ggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
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-----gtacattcccc----tcctgctgaattttgtttcttat-------ttctttatatggaaataagaatctagtcgtgaacgaacttctaatg-cagGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAG
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G23510.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatttttctttccccagttctctt-tggaaattttcttttcatagcatcattttttgtcctaactcaagaatggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
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------------gtacattcccctcctgctgatttctgtttcttattttc--tttatatggaaataagaatatagtcgttaatgaaattctaatg-cagGAGCAAAGAAGCCAAATTACCTTGTCACTGCTGATGATGTTGGTTTATGTCTTGCTATTGAAGTTCAGCCTTTGGATGACCGGAACCGGAAG
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 3'ss of exon 15
--------------------------------------------------------------------------------------------gtatttttctttccccagt-------tctctttggaaattttcttttcata-gcatcattttttgtcctaactcaagaa-tggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
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gtacctatgtttgttccccctactacccttgctttattctcaaagtttatctttccattttttctttacagttatgtatggcgatacaaaatatatatatatatacaaaatatatatatatatatatatataatatatatatatatatatatatatatatgacgataagagcttgattgttgacaatgtccaaacgcagGAGCAAAGAGGCCCGATTATCTTGTCACAGCCGATGATGTTGATTTATACCTTGCTATTGAAGTTCACCCCTTGGATGACAAGAACCGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcatcattttttgtcctaactcaagaatggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
tttct CT-rich tract
attttttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttttctttccccagttctctttggaaattttcttttcatagcatcattttttgtcctaactcaagaatggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG