Sequence
atgc intronic sequence ATGC exonic sequence...gtttctacttgcatctattgagataaatttccttttatttttatgtgtgtgtgaatgtcattgttgtactcaatatggaatcttatttttcttgagttagGTTGAGTGCTCAAACCCATCCTTACTTCCTGAACCTGGAAAGAGGACATCAATTGAGGAGCCATATGTTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 14
-------------------------------------------gtttctacttgc-atctattgaga-taaatttccttttatttttatgtgtgtgtgaatgtcattgttgtactcaatatggaatcttatttttcttgagttagGTTGAGTGCTCAAACCCATCCTTACTTCCTGAACCTGGAAAGAGGACATCAATTGAGGAGCCATATGTTAAG
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gtaatttcttctcattcctaagctcccttctatttaatactttattttggtgaactattcattaaaactgaatagcctctattttttaaatgtatataaacttgaacgcaatcattttgtctgaatcacaaaatccttga---agGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAG
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G33480.1 (Glycine max), 3'ss of exon 8
-------------------------------------------gtttctacttg--catctattgagataaatttccttttatttttatgtgtgtgtgaatgtcattgttgtactcaatatg---gaatcttatttttcttgagttagGTTGAGTGCTCAAACCCATCCTTACTTCCTGAACCTGGAAAGAGGACATCAATTGAGGAGCCATATGTTAAG
|| |||| || ||| | || |||| | | ||||||| | | | || ||| || | ||| | || ||||| | | ||||| ||||||| |||||||| ||||| ||||||||||| |||||||| |||| ||||||||||||||||| |||||||
gtaatttcttctcattcctaagttccctttctatgtaatactttattttactaaactattcattaaaattgatttgcctctattttt---taaatatatatcatattaatgcaatcattttgtctgaatcacaaaatccttga---agGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAG
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 14
-------------------------------------------gtttctacttg--catctattgagataaatttccttttatttttatgtgtgtgtgaatgtcattgttgtactcaatatg---gaatcttatttttcttgagttagGTTGAGTGCTCAAACCCATCCTTACTTCCTGAACCTGGAAAGAGGACATCAATTGAGGAGCCATATGTTAAG
|| | || || ||| | | |||| | | ||||||| | | | || ||| || | ||| | || ||||| | | ||||| ||||||| |||||||| ||||| ||||||||||| |||||||| |||| ||||||||||||||||| |||||||
gtaatttcttctcattcctaagttccctttctatgtaatactttattttgctgaactattcattaaaactgatttgcctctattttt---taaatatatatcatattaatgcaatcattttgtctgaatcacaaaatccttga---agGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgtgtgaatgtcattgttgtactcaatatggaatcttatttttcttgagttagGTTGAGTGCTCAAACCCATCCTTACTTCCTGAACCTGGAAAGAGGACATCAATTGAGGAGCCATATGTTAAG
tcttatttttctt CT-rich tract
aatcttatttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttctacttgcatctattgagataaatttccttttatttttatgtgtgtgtgaatgtcattgttgtactcaatatggaatcttatttttcttgagttagGTTGAGTGCTCAAACCCATCCTTACTTCCTGAACCTGGAAAGAGGACATCAATTGAGGAGCCATATGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - gcatcta
- - - - - - - - - - agataaa
- - - - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtc