Sequence
atgc intronic sequence ATGC exonic sequence...gttgctatttcataagtgaaatggattctttttttcttactatttctgccagttatgtaatgattgaactggatgatgatgccatggtgggaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 10
gttgctatttcataagtgaaatggattctttttttcttactatttctgccagttatgtaa-----tgattgaactggatgatgatg-ccatggtgggaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
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------atttgattttcatgatgcaatcgtcatttccctttatacttacaagttactaagatttctaggtgaattaattgactatgatcatggtaaacacctgcagATGGGCTCAAGAATGAAAAAATCAATATTTGACGAACAAACATCGAAGGCGTTGAAGAAATGGCACATGGCTGTGAAAAAGAAGCAAGGAGTGAAACTTG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA11G09270.1 (Glycine max), 3'ss of exon 14
gttgctatttcataagtgaaatggattctttttttcttactatttctgccagttatgtaatgattga--actggatgatgatgccatggtgggaa--cttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
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----tttaaacataatgttatacgatttatatttgcaagttataaacgtttgaattggtctaattggcgactatgtatcactgcaaacacacacatacacgcagATGGGTTCAAGGATGAAAACAGCAGTATTTGAAGAGCAAACAAACAAGGCTCTGAAGAAATGGCACATGGATGCGAAGAAGAAGAAGAAGAAGCATGTAG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA01G36170.1 (Glycine max), 3'ss of exon 13
gttgctatttcataagtgaaatggattctttttttcttactatttctgccagt-tatgtaatgattgaactggatgatgatgccatg-gtgggaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
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tatgtaatattaca--cgatttacttttgcaagctatgaacgtttgaattggtctaattgacgacaatgtatcactgtaaacacacacatacatacacgcagATGGGTTCAAGGATGAAAACAGCAATATTTGACGAGCAAACAAACAAGGCTCTGAAGAAATGGCACATGGCTGCGAAGAAGAAGCAGGGAGGAGCAGTGA
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 14
gttgctatttcataagtgaaatggattctttttttcttactatttctgccagttatgtaatgattgaactggat-----gatgatg-ccatggtgggaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
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------atttggttttcacgatgcaatcctcatttacctttatacttacaagttactaagatttcaaggtggattaattgactatgatcatggtaaacacatgcagATGGGCTCGAGAATGAAAAAATCAATATTTGACGAACAAACGTCGAAGGCGTTGAAGAAATGGCACATGGCTGTGAAAAAGAAGCAAGGAGTGAAACTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689026|gb|EC930382.1|EC930382EST: TATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCTTATAACTCAG ATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCC
genomic: TATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCTTATAACTCAGgtatcgtcat ... gaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgccagttatgtaatgattgaactggatgatgatgccatggtgggaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
ttatgtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgctatttcataagtgaaatggattctttttttcttactatttctgccagttatgtaatgattgaactggatgatgatgccatggtgggaacttgcagATGGGTTCAAACATGAAGAGATCGGTATTTGATGAACAAACATCCAAGGCCCTTAAGAAGTGGCACATGGCTGTGAAGAAGAGGCATGGGGGGAAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggt