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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttattctctattggattgttattattatgtcatttgttctgagatagaattctaatcacacaatctatgcagGCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTCAG

Basic information

species Vitis vinifera
transcript Vv07s0031g01750.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G15130.1 (Glycine max), 3'ss of exon 14
gtata-tttattctctattggattgttattattatgtcatttgttctgagatagaat------------tctaatcacacaatctat---gcagGCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTCAG
||||| ||| || ||| |    || || || || |||   |  || | |  ||| ||            ||| || | |  || | |   ||||| |||||||| || ||||| || || ||||||||||||||||||||||| |||
gtataatttgttttctttcttgttattcttcttttgttcctctttttaaattagcatgactcaaattagtcttataatattatttgtatggcagGACCTGTTGATGAATCAAAGAATCAACTTCCTGATATTTTGTGTGTCATCCAG

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G31850.1 (Glycine max), 3'ss of exon 14
gtatatttattctctattggattgttattattatgtc--atttgttctgagatagaat--tctaatcacacaatctatg---cagGCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTCAG
||||| || || |   ||   |||||||| || | |   | |||   | |     | |  ||| || | |  || | ||   |||| |||||||| || ||||| || || ||||||||||||||||||||||| |||
gtataattgtttttctttc--ttgttattcttctttttaaattgacatcactcgaattagtcttataatagtatttgtgtgacagGACCTGTTGATGAATCAAAGAATCAACTTCCTGATATTTTGTGTGTCATCCAG

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G43960.1 (Glycine max), 3'ss of exon 15
--------------------gtatatttattctctattggattgttattattatg--tcatttgttctgagatagaattctaatcacacaatctatg-cagGCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTCAG
                    | |     |||    ||   | |     |||| |     |  ||   |||   ||   | | ||   |   | |||| |||| |||||||| || ||||| || || |||||||||||||||||||| || |||
acgaccgcaattgcggttgcggactgcaatttaaaatcatagttcctctattttaaacgacatgacttgaatgaggcatatgatggtatt-tgtatgacagGACCTGTTGATGAATCAAAGAATCAACTTCCTGATATTTTGTGTGTGATCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188376|gb|CF607725.1|CF607725
EST:     TTTACAATTAATGGCTGATGCTCCAGCTCACCACTTGTTTGTGTTACTTG                         GCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTC
genomic: TTTACAATTAATGGCTGATGCTCCAGCTCACCACTTGTTTGTGTTACTTGgtatatttat ... atctatgcagGCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattattatgtcatttgttctgagatagaattctaatcacacaatctatgcagGCCCTGTTGACGAGTCAAAAAACCACCTTCCTGATATTTTGTGTGTCATTCAG
                                ttctaat  putative branch site (score: 2)
                              aattctaat  TA-rich tract