Sequence
atgc intronic sequence ATGC exonic sequencegtaacctccatttgttgaacaagctctccatttattttattgttttcttttccatgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA19G35460.1 (Glycine max), 3'ss of exon 17
gtaacctccatttgttgaacaagctct-ccatttattttattgttttcttttccatgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
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gtaggaaaagttgttccattctactttgtcttctgtacatttgctttcttttcctagtctcagcttcttccatcccttatttagGTCTCGAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGT
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA10G04850.1 (Glycine max), 3'ss of exon 17
gtaacctccatt-tgttgaacaagctctccattt-attttattgttttcttttcc-atgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
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gtaacaaactttatcctgttcttgtttttctttttatatagttgctttcttttcccaggcattgcaattttc-acccctttttcagGTCTCAAATGAAGCAGAGCACTGCCTCACCATTGTTTTATCTCAGAATGATCCATTCAGATGTTTAAGT
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA03G32710.1 (Glycine max), 3'ss of exon 17
gtaacctccatttgttgaacaagctctccatttattttattgttttcttttccatgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
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gtagcaaaagtcccatt--ctactttgtcttttatacatttgctttcttttcctaatctcagcttcttccatcccctttttagGTCTCGAATGAAGCAGAGCACTGCCTGACCATTGTTCTATCTCAGTATGATCCATTCAGATGTTTAAGT
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G19230.1 (Glycine max), 3'ss of exon 17
gtaacctccatt-tgttgaacaagctctccatttattttattgttttcttttc-catgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
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gtaagcagctttatcatgttcttgattttcttttatgtagttgctttcttctctcaggttctgcaattttc-acctcttcttcagGTTTCAAATGAAGCAGAGCACTGCCTCACCATTGTTTTATCTCAGAATGATCCGTTCAGATGCTTGAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttattttattgttttcttttccatgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
ttctatttcctattc CT-rich tract
attttattgttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacctccatttgttgaacaagctctccatttattttattgttttcttttccatgtctcatggtattctatttcctattcagGTTTCAAATGAAGCAGAACATTGCTTGACTATTGTGTTATCTCAGTATGATCCATTCAGATGTTTAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG