Sequence
atgc intronic sequence ATGC exonic sequencegttagttcaattttccaaacaccagtttgaacggaaggttgtcaatttatataaactgtaatttctgttatttctacattcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 3'ss of exon 12
gttagttcaattttccaaacaccagtttgaacggaaggttgtcaatttatat-aaactgta----atttctgttatttcta-cattcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG
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----gttataatgcacaatgaggaggatatttacatattcattcattgttattgaagtgcacagaaatcatggtattgttgtcatttgttcagGTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACGTCATGAATCTCGCAGAATTGATAATCAG
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA02G01060.2 (Glycine max), 3'ss of exon 14
gttagttcaattttc--caaacaccagtttgaacggaaggttgtcaatttatataaactgtaatttctgttatttctacattcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG
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gtcaatttgtttcttgactaatacttcccttcatacattgctgttgat--gcattattaatgatcattatga-----------ctgcagGTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 3'ss of exon 13
gttagttcaattttccaaacaccagtttgaacggaaggttgtcaatttatataaactgt-aatttctgttatttctacattcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG
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gttagttctgtta-cagcagagcagtatg--tgaatctctgtcaa---gtgtctgttgttgatcgtttattctcctgaactgctgcagGTGGTGGAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687042|gb|EE064104.1|EE064104EST: TAGAAATTGTTAAAGAATATAAGATCTACACTGAGGAAGAAAGGAAAAAG GTCGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCT
genomic: TAGAAATTGTTAAAGAATATAAGATCTACACTGAGGAAGAAAGGAAAAAGgttagttcaa ... attcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCT
EST:
gi|110720527|gb|EE096525.1|EE096525EST: TAGAAATTGTTAAAGAATATAAGATCTACACTGAGGAAGAAAGGAAAAAG GTCGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCT
genomic: TAGAAATTGTTAAAGAATATAAGATCTACACTGAGGAAGAAAGGAAAAAGgttagttcaa ... attcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaaggttgtcaatttatataaactgtaatttctgttatttctacattcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG
cattcct CT-rich tract
aatttatataaactgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagttcaattttccaaacaccagtttgaacggaaggttgtcaatttatataaactgtaatttctgttatttctacattcctacagGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG