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...ggttctttttatgcccctagctgaaggcaatggccttgcaatatcgtgtttctcaacttcaacatttgttctgaatttctaaaacatattttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGCAAATTCAGCAGTGATCGAACCATAGCTCAATACGCCAAGGAAATTTGG
species | Vitis vinifera |
transcript | Vv06s0004g06020.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|110703465|gb|EE080336.1|EE080336
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|46910305|gb|CN545680.1|CN545680
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGGAGCCTACAA GGATAGGAAAAGACGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|110384669|gb|EC949123.1|EC949123
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|110390714|gb|EC955638.1|EC955638
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|28960619|gb|CB340317.1|CB340317
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|18458867|gb|BM437145.1|BM437145
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|37190441|gb|CF609790.1|CF609790
genomic: GTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|30135822|gb|CB921160.1|CB921160
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACNA GGATAGGANAAGATGGCNTAA-GATGTCTATATTGAGCACTGCTGGGAGTGEST: gi|28960453|gb|CB340229.1|CB340229
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGC-TAAAGATGTCTATATTGAGCACTGCTGGGAGTG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGGGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGEST: gi|110379272|gb|EC944457.1|EC944457
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
EST: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAA GGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
genomic: GACTTCCCTGGCTACATGGATGCTCAGGCAAGAGTGGATGAAGCCTACAAgtaagaaact ... ttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGG
gtgtttctcaacttcaacatttgttctgaatttctaaaacatattttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGCAAATTCAGCAGTGATCGAACCATAGCTCAATACGCCAAGGAAATTTGG
ttctaaa putative branch site (score: 2)
ttttgcct putative PPT
tgaatttctaaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttctttttatgcccctagctgaaggcaatggccttgcaatatcgtgtttctcaacttcaacatttgttctgaatttctaaaacatattttgcctgcagGGATAGGAAAAGATGGCTAAAGATGTCTATATTGAGCACTGCTGGGAGTGGCAAATTCAGCAGTGATCGAACCATAGCTCAATACGCCAAGGAAATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - gccccta
- - - - - - - - - - - gaaggca
- - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaac