Sequence
atgc intronic sequence ATGC exonic sequencegtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 14
gtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
|||||||| || | |||| | || || | || || || ||| | || || | | | | || |||| || || ||||| | | | |||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
gtatgatt--cacttctttgcttctttatt--gcttaataattgttgttccat---ttcctattttacatcattccaaattactgtttatgatatgcagGTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATAATGAG
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 14
gtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
|||||| | ||||||| |||| ||| | || | | |||| || |||| ||| | || |||| ||||| ||||||| | | |||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||
gtatgaatctggttcttttatacattgttgcttaatac-tacaaattatgtttcctgtttt----ttcatcattccgaattactgcttttgatgtgcagATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATACTGAG
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 14
gtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
|||||| | ||||||| |||| ||| | || | || | | ||||||| |||| || | |||| | ||| ||||||| | | |||||||||||| | ||||||||||| |||||||||||||||||||||||||| | || ||||||||| | |||
gtatgaatctggttcttttattcattgttgcttaatactacaaattcagtttcctgttttt-----tcttcattctgaattacttcttttgatgtgcagATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATACTAAAAAAGCTTCATACTGAG
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 14
gtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
|||||||| || | |||| | || || | || || ||| ||| | || || | | | |||| | |||| || | ||||| | | | |||||||||||| | |||||||||||||||||||||||||||||||| ||||| | ||||| ||| || |||
gtatgatt--cacttctttgcttctttatt--gcttaataattcttgttccat---ttcatattttacattattctgaattactgttcatgatatgcagGTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCATTTATACTAAAGAAACTTTATAATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
ttcttgc CT-rich tract
ttatgttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcagATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC