Sequence
atgc intronic sequence ATGC exonic sequence...gtgataagtgattaaaaccatccagttctaggaaatgtttgagtacatgttcattttgagttgatgagtgtatgatgcaaactgtttgactgattgacagGTGAGCTTTGTTAAGATTGTGCCCGAGTTTCCTCGAACTGCTTCTAACAAGATACTGAGGCGAGTTTTGAGGGACCAAATTAAGCACGAGCTTTCAGTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g00740.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G11980.1 (Glycine max), 3'ss of exon 13
-------------------------------------------------------------------------------------------gtgataagtgattaaaaccatccagttctaggaaatgtttgagt--acatgttcattttgagttgatgagtgtatgat-gcaaactgtttgactgattgacagGTGAGCTTTGTTAAGATTGTGCCCGAGTTTCCTCGAACTGCTTCTAACAAGATACTGAGGCGAGTTTTGAGGGACCAAATTAAGCACGAGCTTTCAGTTT
| ||| || | || || | || || | || ||| |||| || | ||| | ||| ||| | || |||||||||| ||||||| ||||||||||| ||||| ||||| ||||| ||||| |||| ||| |||||||||| || ||||| |||| ||||| ||| ||
gtatgaccctttgttcattgtaagcaattacgattttgaattgaatacattgtcaaaagcaataagttagtgacttaaaaattcatgaaatttagagtttgaagggaaattgaaatttttatgcaaaaattaacctgacttgtgatgaggaagttactggtttgatgttcacaactcattttgttactttacagGTGAGCCTTGTTAAAATTGTGCCCGATTTTCCCCGAACAGCTTCCAACAAATTACTAAGGAGAGTTTTGAGAGATCAAATGAAGCGTGAGCTATCAATTC
upper sequence: Vv06s0004g00740.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G29030.1 (Glycine max), 3'ss of exon 13
--------------------------gtgat-aagtgattaaaaccatccagttctaggaaat--gtttgagt--acatgttcattttgagttgatgagtgtatgat--gcaaactgtttg-actgattgacagGTGAGCTTTGTTAAGATTGTGCCCGAGTTTCCTCGAACTGCTTCTAACAAGATACTGAGGCGAGTTTTGAGGGACCAAATTAAGCACGAGCTTTCAGTTT
| | || ||||| | || | ||| ||| | ||| | | |||| | | || || |||||| ||| | | | |||||| ||| ||||||| |||||||| || ||||||||||| |||| ||||| ||||||||| |||| ||||||| ||||| |||| | |||| ||||||
gtctgactcttagttggttttaaacaatattgaattgattgtggtttattaatttgtgaaaactgacatgacttgggatgatacaatacagttcactgatttagcattcacaaactcttttcattacataacagGTAAGCCTTGTTAAAATTGTGCCAGACTTTCCTCGAACATCTTCCAACAAAATACTGAGGAGAGTAATGAGGGATCAAATGAAGCTCCAGCTATCAGTTC
upper sequence: Vv06s0004g00740.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G55320.2 (Arabidopsis thaliana), 3'ss of exon 13
gtgataagtgattaaaaccatccagttctaggaaatgtttgagtacatgttcattttgagttgatgagtgtat---gatgcaaactgtttgactgattgacagGTGAGCTTTGTTAAGATTGTGCCCGAGTTTCCTCGAACTGCTTCTAACAAGATACTGAGGCGAGTTTTGAGGGACCAAATTAAGCACGAGCTTTCAGTTT
|| || || | | | | || | | | | | || | ||| | || | | |||| | | | | | | |||||||| ||||| ||||||||||| |||||||| |||| ||||||| |||| ||||||| |||| ||||| || || |||||||| || || | |
-------gtaatcaatatctttga---tgagtttttctataaattcaaagttattataagattttttgtgtgcttaaaaatggattttgcaaaaatattgcagGTGAGTTTTGTGAAGATTGTGCCGGAGTTTCCAAGAACAGCTTCTAGCAAGCTACTGAGAAGAGTCTTGAGAGATCAGATTAAGCAAGAACTACTATCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgttcattttgagttgatgagtgtatgatgcaaactgtttgactgattgacagGTGAGCTTTGTTAAGATTGTGCCCGAGTTTCCTCGAACTGCTTCTAACAAGATACTGAGGCGAGTTTTGAGGGACCAAATTAAGCACGAGCTTTCAGTTT
gactgat putative branch site (score: 3)
tcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgataagtgattaaaaccatccagttctaggaaatgtttgagtacatgttcattttgagttgatgagtgtatgatgcaaactgtttgactgattgacagGTGAGCTTTGTTAAGATTGTGCCCGAGTTTCCTCGAACTGCTTCTAACAAGATACTGAGGCGAGTTTTGAGGGACCAAATTAAGCACGAGCTTTCAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - attaaaa
- - - - - - - - -ccatcca
- - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaac