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...accaactagtttaaatttgtgcttggatatattctgttatatatatatatatcctctatgtgagtaaaatttttattgattttgtgttgttgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAATTGCATCAATCTTCATCTCCCAGCAACATCAGACCCTAATTCATACTAAT
species | Vitis vinifera |
transcript | Vv05s0077g00140.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATG GATGAGATCAAGGCATATCCATCTTATATTTGTTGCGCTTAGTTGTCGAATEST: gi|30129161|gb|CB914500.1|CB914500
genomic: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATGgtttgttttt ... tgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAAT
EST: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATG GATGAGATCAAGGCATATCCATCTTATATTTGTTGCGCTTAGTTGTCGAATEST: gi|30321258|gb|CD004520.1|CD004520
genomic: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATGgtttgttttt ... tgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAAT
EST: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATG GATGAGATCAAGGCATATCCATCTTATATTTGTTGCGCTTAGTTGTCGAATEST: gi|30125879|gb|CB911218.1|CB911218
genomic: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATGgtttgttttt ... tgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAAT
EST: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATG GATGAGATCAAGGCATATCCATCTTATATTTGTTGCGCTTAGTTGTCGAATEST: gi|30320780|gb|CD004042.1|CD004042
genomic: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATGgtttgttttt ... tgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAAT
EST: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATG GATGAGATCAAGGCATATCCATCTTATATTTGTTGCGCTTAGTTGTCGAATEST: gi|32457197|gb|CD798371.1|CD798371
genomic: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATGgtttgttttt ... tgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAAT
EST: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATG GATGAGATCAAG
genomic: GTAACTCCGGATTACTACACACATATGAGATGTACAACCTGACTTGCATGgtttgttttt ... tgtgcttcagGATGAGATCAAG
tatatatcctctatgtgagtaaaatttttattgattttgtgttgttgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAATTGCATCAATCTTCATCTCCCAGCAACATCAGACCCTAATTCATACTAAT
tattgat putative branch site (score: 3)
tatgtgagtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaactagtttaaatttgtgcttggatatattctgttatatatatatatatcctctatgtgagtaaaatttttattgattttgtgttgttgtgcttcagGATGAGATCAAGGCATATCCATCTTATGTTTGTTGTGCTTAGTTGTCGAATTGCATCAATCTTCATCTCCCAGCAACATCAGACCCTAATTCATACTAAT
-ccaacta
- - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa