1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttttcctatgaagtagctaacttaatgatcctgaagcacctctgtatcttttccatttgggaatctgtttgtgatattggtaccttcatgtgtcatgcagTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCAAGCAGAGGGAGACATTTTGGTTTTCACATCAACCTTCAATCCAATGAAA
species | Vitis vinifera |
transcript | Vv05s0051g00870.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGGCAACCTAGCAAACCTGACTACNAGGATATACCTTGTGCTGTGTTCTG TTTACCACCCCTTTCTGTTGTGGGTTTGAGTGAAGAACAGGCTACAGATCAEST: gi|161714653|gb|FC062658.1|FC062658
genomic: GGGCAACCTAGCAAACCTGACTACAAGGATATACCTTGTGCTGTGTTCTGgtaccaattt ... tgtcatgcagTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCA
EST: GGGCAACCTAGCAAACCTGACTACAAGGATATACCTTGTGCTGTGTTCTG TTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCA
genomic: GGGCAACCTAGCAAACCTGACTACAAGGATATACCTTGTGCTGTGTTCTGgtaccaattt ... tgtcatgcagTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCA
atcttttccatttgggaatctgtttgtgatattggtaccttcatgtgtcatgcagTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCAAGCAGAGGGAGACATTTTGGTTTTCACATCAACCTTCAATCCAATGAAA
tgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcctatgaagtagctaacttaatgatcctgaagcacctctgtatcttttccatttgggaatctgtttgtgatattggtaccttcatgtgtcatgcagTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCAAGCAGAGGGAGACATTTTGGTTTTCACATCAACCTTCAATCCAATGAAA
- -tcctatg
- - - - - - - - - - - - - - - -tgaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accttca