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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttttggtttgcattttcccttggttactactcaaccggagttggacaaatcttcataaaatttatatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAACATCAAACTTTGATCAGAAGATTGGTGTTCAGATTATCCAGAATGCTCT

Basic information

species Vitis vinifera
transcript Vv05s0051g00340.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00340.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 3'ss of exon 14
---------------------------------------------------gtaagctt-tttggtttgcattttcccttggttactactcaaccggagttggacaa-atcttcataaaatttatatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAACATCAAACTTTGATCAGAAGATTGGTGTTCAGATTATCCAGAATGCTCT
                                                    |   ||| ||  |||||||| ||  | |  ||| | | |||      |   |  | |||||   |    ||| | |  ||||||| || || |||||||||||||| || || ||| |||| ||| |||| ||  | ||||||||||| ||||||||||| || || || ||||||||| |
gtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattatta-tgcccaagtatgctgacatgacatctttgca----ttacaat-acagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTT

upper sequence: Vv05s0051g00340.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaagcttttt--ggtttgcattttcccttggt-tactactcaaccggagttggacaaatcttcataaaatttat------atttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAACATCAAACTTTGATCAGAAGATTGGTGTTCAGATTATCCAGAATGCTCT
||| |  | ||   ||  | |     | ||| | || | || ||    |||| |  |  |  | |  |||   ||      | ||||||| || || ||||| ||||| || ||  | | ||||||||| ||||| |||||| | |||||||| |||||||||||||| |||||||| ||||| ||  |
gtatgtctcttccagtgaggaagactctttgatatagtgctaaa---aagtttgctatgtgctaaagaaacaaatcaaaacacttgcagGAGGAGGTGTGGCTCTTCTATACGCAGCAAGAGAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAGAACGCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34547889|gb|CF516121.1|CF516121
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATCGTACCAG                         GTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA
EST: gi|34542276|gb|CF510508.1|CF510508
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATCGTACCAG                         GTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA
EST: gi|33404079|gb|CF209706.1|CF209706
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATCGTACCAG                         GTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGGCAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA
EST: gi|110363713|gb|EC927323.1|EC927323
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATCGTACCAG                         GTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA
EST: gi|110700181|gb|EE077929.1|EE077929
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAG                         GTGGTGGTGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA
EST: gi|77587495|gb|DV222914.1|DV222914
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATCGTACCAG                         GTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA
EST: gi|34547812|gb|CF516044.1|CF516044
EST:     AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATCGTACCAG                         GTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAGCTGCCAA
genomic: AGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgtaagctttt ... atatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggttactactcaaccggagttggacaaatcttcataaaatttatatttgcagGTGGTGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAACATCAAACTTTGATCAGAAGATTGGTGTTCAGATTATCCAGAATGCTCT
                          acaaatcttcataaaa  TA-rich tract