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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaaccctccacctatacccccaaaaagttgaaccagttcttctactatccccataatccccattaatgccgcagGATCATGAGCTAGTACTAAAGTTGATCCCCATGATGGTCCTAGCTGGTGTACTG

Basic information

species Vitis vinifera
transcript Vv05s0020g02260.t01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360395|gb|EC923461.1|EC923461
EST:     TGGGGACATTCTTGGGCACCTTTCTGATTGGACTTGCATTCTATTTGAAG                         GATCATGAGCTAGTACTAAAGTTCATCCCCATGATGGTCCTAGCTGGTGTA
genomic: TGGGGACATTCTTGGGCACCTTTCTGATTGGACTTGCATTCTATTTGAAGgtaaccaacc ... aatgccgcagGATCATGAGCTAGTACTAAAGTTGATCCCCATGATGGTCCTAGCTGGTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaaaagttgaaccagttcttctactatccccataatccccattaatgccgcagGATCATGAGCTAGTACTAAAGTTGATCCCCATGATGGTCCTAGCTGGTGTACTG
                                         cattaat  putative branch site (score: 3)
                                          attaat  TA-rich tract