Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcagCTGCTGAGTTGTATGATTTTGATGATGAAAAG

Basic information

species Vitis vinifera
transcript Vv05s0020g01780.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA07G38050.2 (Glycine max), 3'ss of exon 14
gtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatt--tatcctgctttgttcagCTGCTGAGTTGTATGATTTTGATGATGAAAAG
     |  |  ||  |    |    ||   |  |||  || |  |    |||     || | |  |||  ||  ||   |||||||  |||  | | || |  |||||||||||||||||||||||||||||| |||
---catacaagcaaaaaattgactcctggttgtttagctaatattgccttttaacttgtaaggaagcttgaagtta--ctaacattaatatttttcattttgtagCTGCTGAGTTGTATGATTTTGATGATGAGAAG

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 14
gtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatt--tatcctgctttgttcagCTGCTGAGTTGTATGATTTTGATGATGAAAAG
     |  |  ||  |    |    ||   |  |||  || | ||   ||||| |    || ||   |   |  | | | ||||||  |||  | | || |  |||||||||||||||||||||||| ||||| || 
---cttaaaagcaaaaaattgactcctggttgtttagctaat-ataggcttttaacttgtaaggaagtttgaagttact-aacattaatatttttcattttgtagCTGCTGAGTTGTATGATTTTGACGATGAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28967912|gb|CB346945.1|CB346945
EST:     TAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATA                         CTGCTGAGTTGTATGATTTTGATGATGAAAAG
genomic: TAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggat ... ctttgttcagCTGCTGAGTTGTATGATTTTGATGATGAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcagCTGCTGAGTTGTATGATTTTGATGATGAAAAG
                            atttaac  putative branch site (score: 3)
                                        tcctgcttt  putative PPT
                   taaaatataatttaac  TA-rich tract