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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattttaattttatcatcattttagtattagctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT

Basic information

species Vitis vinifera
transcript Vv04s0044g01210.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os11g10420.2 (Oryza sativa), 3'ss of exon 14
gtttgattttaattttatcatcattttagtattagctaatatatttttgagatgatggt-cattgacagtatt-tcttgatttc-tagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
             ||  ||| |  | | |||    || ||   ||   |||  | |  | || |   | |  | ||||| | |  | ||||||||| || ||| ||||||| || || ||||| |||||| | ||||||||||| || |||||||||||||| || ||||| || || |||||||| || |
------------gttagtcaactgtcttgta---actcatcatttgcagagggggttttacagttctaatgctatcttggtatggttgcagCAATGCGTGTCTCTGGTGCTTTCACTTATCAGTAGCAGCATGGATGCATGGCGTACTCGGCAGTATGATTACTACCAGAGAGTATTGAATGGGATTTTAT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
gtttgattttaattttatcatca-ttttagtattagctaatatatttttgagatgatggtcattgacagtatttcttgatttct-agcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
      ||| |||  ||  || | ||    | ||| ||   || |||||       ||    ||  |   |||| ||  |||||  |||||||||||||||||||||||| ||||| || ||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
-----gtttcaatactaatattagttactctcttaactgtaattttttt-------tgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
gtttgattttaattttatcatcattttagtattagctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
      ||| |||  ||  || | ||      |    | | |||||||     |   ||     ||| | ||| ||   |  | |||||||||||||||||||||||| ||||| || ||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||
-----gtttcaatactaatattagtt--actctcttaactgtatttttttttcgcctgtttgctacatt-ttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G16620.1 (Glycine max), 3'ss of exon 17
gtttgattttaattttatcatcattttagtattagctaatatat-ttttgagatgatggtcattgacagtatttcttga----tttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
      ||| ||| |||  |   ||      ||| ||   | || |||| || || || |  || | |||   | ||      ||| | |||||||||||| || |||||||| || || || ||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||| ||||| || || |
-----gtttcaatattaataatgttacctatttaactgtcacatgtttttaggtg-tgatttttaagagtgagtgttataatttttttggcagCAATGTGTCTCCTTGGTGCTTTCACTCATTAGCAGCAGCCTGGATGCTTGGAGGACACGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTAT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 15
gtttgattttaattttatcatcattttagtattagctaatatatttttgagatgatggtcattgacagtatt-tcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
      ||| ||| |||  |   ||      ||| ||   | || |||  |    || |  || | ||| || |  |  ||| | |||||||||||| || |||||||| || || || ||||| ||| | ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| || || |
-----gtttcaatattaataatgttacctatttaactgtcaaatgtttctgggtgtgattgttaagagtgttataattctttttggcagCAATGTGTCTCCTTGGTGCTTTCACTCATTAGCAGTAGCCTGGATGCTTGGAGGACGCGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTAT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 3'ss of exon 15
-------gtttgattttaattttatcatcattttagtattag--ctaatatatttttgagatgatggtc--attgacagta--tttcttgatttcta-gcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
       | ||||  | | |     |||   || |||  ||   |  || |||  | ||  | | | |   | | |  |    ||| |||  | ||  ||||||||| ||||| |  ||| |    || ||    |  ||| | |||||||||||||||||||| |||||||||||||||| |||| | ||||| ||  | |
gacaagagattgacatgagta--gccatatattaagtggtacatccgatgtatgatggatgttacgcttgaactaattgggattttattgcatgctgtgcagCAATGCGTATCATCTGTGTTGGAGCTTATTGCTAAAAGCCTGGATGCATGGCGGACACGGCAATATGATTATTATCAGAAGGTTCTGAATGGTATTCTTT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 3'ss of exon 15
------gtttgatttta-attttatcatcattttagtattagctaatat-atttttgagatgatggtcattga--cagtatt-tcttgatttctag-cagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
      |||||    |  || | || |  | ||    ||   |  | ||  |||||| ||   |  || || |      ||| |  ||  || |   |||||||| ||||| |  ||  |    || |||   |  ||  | ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||  | |
acttttgtttggcaatgcatctgattacgaattggcaatgttccgaaattgtttttgtgaactttttccttcagctgacattatactgccttttgttcagCAATGCGTATCATCAGTTTTGGAGCTTATCGCTAAAAGTCTGGATGCATGGCGGACACGGCAGTATGATTATTATCAGAAGGTGTTGAATGGTATTCTTT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
gtttgattttaattttatca-tcattttagta-ttagctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
                 | | | ||  ||| | || || ||  |  ||| |   |  |  |||| | |  | ||| ||  ||  | |||||||||||| || |||||  | || || |||||||| ||||||||||| ||||| || |||||||||||||| |||||  | ||||| ||||| |||   |
----------------gtgagttatcctagaactttgcaaactttgtttcg---ttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ06373 (Selaginella moellendorffii), 3'ss of exon 17
gtttgattttaattttatca-tcattttagta-ttagctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
                 | | | ||  ||| | || || ||  |  | | |   |  |  |||| |    | ||| ||  ||  | ||||||||| || || |||||  | || || |||||||| ||||||||||| ||||| || |||||||||||||| |||||  | ||||| ||||| |||   |
----------------gtgagttatcctagaactttgcaaactttgtctcg---ttcttctcatggtttttctttgtttgttcttggcagCAATGCGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT
                                             tttct  CT-rich tract
     atatatttttgagat  TA-rich tract