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...ggcaccaaattttctgcttgttcctttcaccttttgtgagagccttaaaatgcttttatgctagaaaaaatggattttatattgaaattgtgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTA
species | Vitis vinifera |
transcript | Vv04s0023g01300.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|27582875|gb|CB005570.1|CB005570
genomic: GCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|33401954|gb|CF207581.1|CF207581
genomic: AATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AACACCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|29782363|gb|CB347609.2|CB347609
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AACACCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|110694334|gb|EE071348.1|EE071348
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AACACCTGCTCGGCATGTGCCATTACCAGCTTCAATGACTGTAACAAATG AACCTGGTTAAC-ACAAGGATGGGAACTTTTGGC-TAAGAATGGAEST: gi|110700420|gb|EE078440.1|EE078440
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTA-CTACGAGGATGGGAACTTT-GGCATAAGATTGGA
EST: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|30299030|gb|CB975824.1|CB975824
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AACACCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|32246039|gb|CD711858.1|CD711858
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|110379199|gb|EC944379.1|EC944379
genomic: AATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AACACCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCEST: gi|29782317|gb|CB347526.2|CB347526
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
EST: AACACCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG AACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
genomic: AACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATGgttggtatca ... tgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCC
taaaatgcttttatgctagaaaaaatggattttatattgaaattgtgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTA
tgttttcc CT-rich tract
tagaaaaaatggattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaccaaattttctgcttgttcctttcaccttttgtgagagccttaaaatgcttttatgctagaaaaaatggattttatattgaaattgtgttttccagAACCTGGTTACTACGAGGATGGGAACTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- caccaaa
- - - - - - - tgcttgt
- - - - - - - - - - - cctttca
- - - - - - - - - - - - - - -ccttttg
- - - - - - - - - - - - - - - - - - - - - -cttaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat