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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccaagaggattaaagtatcctatattattaaaagtgaatgttgaagagcactaaacatgtgatgaagggggagctcaaatgcttcatcgtgttgcatagttaggatcatagaagaataactgaactagttttcttaatggtcttaaatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC

Basic information

species Vitis vinifera
transcript Vv04s0008g04890.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G30910.1 (Glycine max), 3'ss of exon 13
----------------------gtaagtgcc--aagaggattaaagtatcctat--attattaaaagtgaatgttgaag--agcactaaacatg--tgatgaagggggagctcaaat--gcttcatcgtgttgcatagttaggatcatagaagaataactgaactagttttcttaatggtctta-aatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC
                      | ||    |  |    | ||    | | | |   |||   | || |      ||||   |||| |   | |   |||  |  |   | |  || |  |  |     | || | || | ||  | | | | |||       | | | |  || | |  | ||| ||||||||| || |||||||  |||||  || ||||    ||| |||| |||||||| ||| ||   |||||||||||||||||||||||||| |||||||| ||||
gttagtcaatgcattattctgggaaatcatcttatattgctttctctgttcaactgatttccagaaatttgcagtgaactcagcaattggccttcttgaaaattgacaaacaaaattaggaatgtctctattacttattcagt-ttacatatgaaatgtgacatttgct--ctgattttttttataatgcagGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC

upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA14G16040.1 (Glycine max), 3'ss of exon 13
----------------------------------gtaagtgccaagaggattaaagt-atcctatattattaaaagtgaatgttgaagagcacta----aacatgtgatgaagggggagctcaaatgcttcatcgtgttgcatagttaggatcatagaaga--ataactgaactagttttcttaatggtcttaaatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC
                                   | | |||        || || | ||    |   |||   ||||||   || |     |||     | |  |||  ||     |     ||||  || |    ||     |||   || || ||| |  | |  ||  ||  |||| | |         ||||||||| || || ||||  |||||  || ||||    ||| | || |||||||| ||| ||   |||||||||||||||||||||||||| |||||||| ||||
gttagtcagtgcattattttgggaaatcgttttattcattgctttctctgttcaactgatttcctgaaattttgagtgaactatgcaattggctagcttgaaaattgacaaataaaaattaggaatgtctcttttacttattctgtttatat-atggaatatgacatttgctctgattttttcat--------aatgcagGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCCACTCTTGAAGAGCATGCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC

upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G07580.1 (Glycine max), 3'ss of exon 13
------------gtaagtgccaagag--gattaaagtatcctatattat----taaaagtgaatgttgaa--gagcactaaacatgtgatgaagggggagctcaaatgcttcatcgtgttgcatagttaggatcatagaagaataac-tgaactagttttcttaatggtcttaaatg-cagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC
             | ||||  || |   |||   | |||  ||| || |    |    ||  |   ||||   |||| | ||| |    ||||     |  ||||     | ||  |      || || || | | |   ||||||  ||  ||  |  || | || || ||  | | ||||  || || ||||| |||||  || ||||   |||| |||| |||||||| ||||||   || || |||||||||||||||||||| |||||||| ||||
gttggtggtagcattagtgttaataattgatagtaatattttatgttgtactctctttgttcagcctgaaataagcagtgaacctaaattgaaaaacaaaatcaagaaaattatttttcctttta-ttcggtttagattggaataatatggccttttcctcctgattgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTC

upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA04G07460.1 (Glycine max), 3'ss of exon 13
----------------------gtaagtgccaagaggattaaagtat---cctatattattaaaagtgaatgttgaag--agcactaaacatgtgatgaagggggagctcaaatgcttcat----cgtgttgcatagttaggatcatagaagaataactgaactagttttcttaatggtcttaaatg-cagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC
                       ||| ||  |  |  |||  |  ||   | |   || || ||      |  ||||   |||| | ||| |    ||||     |  ||||   | | ||    | | ||     |||  ||| || ||| ||||  ||   |  |  || | || || ||  | | ||||  || || ||||| |||||  || ||||   |||  |||| |||||||| ||||||   || || |||||||||||||||||||| |||||||| ||||
gttagtgatagcattagtcttgataattgatagtaatattttatgatgtactttctttgttcaaccaacttcctgaaataagcagtgaacttaaattgaaaaacaaaatcaagaacattatgtttccttttattctgtttagat-atggaataata--tggctttttcctcctgatcgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711263|gb|EE087569.1|EE087569
EST:     ACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAG                         GCAGTATTGTGGTATACAGACACTTTAAAGACAAAA-CTACACTTGAAAGA
genomic: ACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGgtaagtgcca ... ttaaatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAA-GA
EST: gi|56408846|gb|CX017098.1|CX017098
EST:     ACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAG                         GCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAA
genomic: ACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGgtaagtgcca ... ttaaatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAA
EST: gi|56408912|gb|CX017164.1|CX017164
EST:     ACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAG                         GCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAA
genomic: ACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGgtaagtgcca ... ttaaatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttaggatcatagaagaataactgaactagttttcttaatggtcttaaatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC
                               ttttcttaat  TA-rich tract