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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttcaaaattgaaatagttttagtctgagaaatttctgcttatttttatatcaagttccaaatacaacttgttgcagAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCT

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G34380.2 (Glycine max), 3'ss of exon 13
--gtaggtttcaaaattgaaatagttttagtctgagaaatttctgcttatttttatatcaagttccaaatacaacttgttgcagAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCT
      ||    |  ||||| ||  |  | | ||   | |||    ||    ||  ||  |||  |  || ||  || || |||||||||||| |||||| ||||||| ||||| || |||  ||||||||| ||||||| ||| |||||||||||
gtaagagtggttaccttgaagta--tcaattttgttgatttttaattttaagtttgatggagtcacccat-ca--ttctttcagAAATGTTGCAAACAACAATCTTGAGGGGCCAATTCCTAGTAATCTTAGCTCATGTAAAAATCTCAACAGCCT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 14
gtaggtttcaaaattgaaatagttttagtctgagaaatttctgcttatttttatatcaagttccaaatacaacttgttg------cagAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCT
           ||  |   |   |||    ||  ||  || || |  ||||| | | |||||  | |    |||  ||       ||||||||||||||||||| ||||  | ||||| || |||  ||||||||| ||||||| ||| |||||||||||
---------gtaagagtggttactttgaagtgtcaa--ttttgttgttttttgttttaagtttgataagtcactccttattctttcagAAATGTTGCTAACAACAATCTCAAGGGGCCAATTCCTAGTAATCTTAGCTCATGTAAAAATCTCAACAGCCT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA06G05900.3 (Glycine max), 3'ss of exon 14
gtaggtttcaaaattgaaatagttttagtctgagaaatttctgcttatttttatatcaagttccaaatacaacttgttgcagAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCT
||| || ||   | |   | ||  | |   |      ||| ||  ||  || ||       || ||     |  |||||||||||||| || |||||| | ||||| || ||  | |||||||||||||| |  |||| |||||||||||||||
gtaagtgtcgttaatatga-agcatcaactttgttggtttttgagtaacttcatg----agtcaaaccttga--tgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgagaaatttctgcttatttttatatcaagttccaaatacaacttgttgcagAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCT
       aaatttctgcttattt  TA-rich tract