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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA

Basic information

species Vitis vinifera
transcript Vv02s0025g03480.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 13
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                                            | ||| |  | | | |   | ||   |         | |||  | ||| || || |||     ||| | | |||  || ||||           |  ||||| || |  |||| ||||||  | |||||||| || |||||||||| |||||| ||||| ||||| |||||||||||||| || |||||||| ||
-------------------------------------------gtatatttttttacaatggaaatctggtataagcttatctgtgtgcaaataaattctaa-----tacttatctttcaatttaca-----------gCTGAGGTTTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 3'ss of exon 11
gttatcttctta-taatattt---tatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
|| |   |   |   | | ||   |  | || |   || ||   | ||  | ||| || |  | || |    |  || |    |||||    |    ||| |  |  |||     || |||||||||| |||| | |    ||| ||||||||    || | ||||||| ||||| |||| || |||||||| || ||||| ||||| ||||| |||||||||||||| || || ||||| ||
gtaagaataaaagcgacacttaagtgaaatttgttgtgctttagtgttgat-tatact-aattgtccagagaaagtaccgaaattttgc--agtgctaacatacagtttatg---ttcatttgtatattcattttctggctagATGAGGTATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 3'ss of exon 11
------gttatcttctta-taatattttatatttggccttgtttct-ttatttgtatatcctcagatttctattcca----cttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatac-----attgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
      | ||  |  | | ||  | || || ||  |    |||||  ||     |||  | ||| |||  |    ||    |||   |   || | |     || |   | |  | || ||| |  |||    ||| |     ||| |||||  ||| |  || ||    ||||  || ||| ||||| |||| || |||||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||
gtacatgataagtggtcagtacaacttaatcttctgttgggtttccattgaagctattgcatcaaattagttcaacaaatccttcaaaaaattatatcccataatagtgtatgtcata-tacatcaattctcttatccctcttattttgttaatagATGCTGTCTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G062034_T01 (Zea mays), 3'ss of exon 4
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
      | || || | |||  | ||       | | | ||  ||  | |||      ||| ||||       || |  | |    ||| |  ||  | |  | ||  |  | | || | | | |    | |||||| |||   ||| ||    || | ||  ||| ||||| |||| || |||||||| |||||||| || || ||||| |||||||||||||| || ||||||||  |
-----gtgctaatgacattgaa-ataaaaatatatcttttgtttaatctattt---aattgctata------agtactcataaaatagcactgagttatacattttttgtcat-atctttctttcttgtttgttat-agATATGGTTTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G01800.1 (Glycine max), 3'ss of exon 13
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaact--tactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
          ||     |||| | ||      | |||| | |||  ||| |  |   |||  ||||    || | |    |||  ||     ||| ||   | |  |  |    |||| |||  |||  ||   || | ||||||  ||||    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || ||
---------gtactgcgtttttttttcttttctctttcatgattattat-tattattattattattattattggtacttgttttctattgttgaaattgatagtaatgtttaacttatatgtcaatatttttctttgt-agAGGAAATATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G37800.1 (Glycine max), 3'ss of exon 13
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcag-atttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                        |   || || ||| ||  ||| ||| || | |  |||  ||||     | |  | || |||||   |  ||  |  |||  | | || | ||  |  ||||   || | ||   || |||  ||||    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| || ||
-----------------------gtactgcatttttttttcttttctatttcatgattattattattagtacttgttttctattgttgaaattga--tagtaatgttcaacttatacatcaatat---ttttctttgtagGGGAAATATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 3'ss of exon 13
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttt-taacttactacctttat-ttgtatatacattgtgttat-cagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                                                     | | |  ||| | || ||||   || | |||||||       || | |||  ||  |  || || |  |  ||   || | ||||  ||||||||| || ||||| |||| |||||||||||||||  | |||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||| ||
---------------------------------------------------gtttaaacctctttccctctta---tg-tattgttagcgttttcctctataatatatgatattcatatcctgaatctgttatcttatgtagAGGAGGTTTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 3'ss of exon 11
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaag-----aacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                                                     |||    |||  ||||||||   |  ||    || ||||      |  |||  ||||   |  || |||  ||| || ||  ||    ||||||| || || ||||| |||| |||  | ||||||||  | |||||||| |||||||| ||||||||||| ||||| || || || |||||||| || ||
---------------------------------------------------gttcaagcctct--tccacttattttatttcatatatgaaaatgtatagttttggacttgtaa--ttaattaatatgtatat-atgcgtgcagAGGAAGTTTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: PP1S68_75V6.1 (Physcomitrella patens), 3'ss of exon 13
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                          ||||   |||  |  ||||  | ||  |    | |  |   || ||  | |   | |  |  | |  |  | || |  |  ||   | ||||| || | | ||||    ||||||||||| ||  | || || || ||||| ||||| |||||| | ||||||| |||||| || || |||||||| |||||||| || |||||||| |||||
--------------------------tggc---gttcgtgcatttagaaatgttagcctcttga---catttctcttcaatgttctgaggattacttattgatctttta--ataatttg-attttccttgt----tcagAGGAGGTTTTCCTTGATACCCAGCCATTGATTCGGTCTGTATTGGATGGATTCAATGTATGCATCTTTGCCTACGGTCAAACAGGATCTGGAAAGACCTA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: PP1S34_101V6.1 (Physcomitrella patens), 3'ss of exon 13
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
         |||||||||  ||| |||| | ||              ||   ||||          || ||| ||    ||||          ||||  ||  ||   |   |   ||  || |   | || |  ||||||||||| ||| ||||||| || ||||| || || |||||| | |||||||  ||||| ||||| ||||| ||||| ||||| || |||||||| |||||
---------ttataatatagtatttttgtcgtt-------------catgctctcaagaaatcgagcctcttggc----tttt----------aactcgtattttctgatgatagatttaatgt---tggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ30678 (Selaginella moellendorffii), 3'ss of exon 9
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                                                                                           |     | ||  || || ||  || |   |   |||  |||    |||| ||||| ||| | ||  | || || || |||||||| || |||||||| | ||| |||||||| ||||| ||||| || ||||| ||||||||||| ||
-----------------------------------------------------------------------------------------gtacgttctatattttgct-ccaatagtcacaatgacac-gtgcatgcagACGAGGTTTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ19920 (Selaginella moellendorffii), 3'ss of exon 8
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                                                                                        | |  ||   ||   |||    ||| || | || |     | ||||  ||||  | |||||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||
----------------------------------------------------------------------------------------gtagtaaagcttccgttaaagtcttgatgtataaacttgatatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                                                                                        | |  ||   ||   |||    ||| || |  | |     | ||||  ||||  | |||||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||
----------------------------------------------------------------------------------------gtagtaaagcttccgttaaagtcttgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA
                aacttac  putative branch site (score: 2)
                           tttatttgtatataca  TA-rich tract