1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gaccggtaggtagtttttgctgcaagcatactgcggactctaacattgcatttggggattttttttttcttctttgttttcctattgttttgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCATGGATAGTAGAGCTGGACTTGGGAGTCATCAGAAGAAGTTGGATCCAG
species | Vitis vinifera |
transcript | Vv02s0012g00870.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCEST: gi|352774158|gb|FQ474681.1|FQ474681
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCEST: gi|352772791|gb|FQ473829.1|FQ473829
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCEST: gi|110370048|gb|EC934223.1|EC934223
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCEST: gi|352764156|gb|FQ467726.1|FQ467726
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCEST: gi|110371746|gb|EC935869.1|EC935869
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCEST: gi|110384475|gb|EC948915.1|EC948915
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
EST: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCG GGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
genomic: GCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGgtaccatctc ... tgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCC
ttgcatttggggattttttttttcttctttgttttcctattgttttgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCATGGATAGTAGAGCTGGACTTGGGAGTCATCAGAAGAAGTTGGATCCAG
ttttgat putative branch site (score: 4)
ttttttttttcttctt CT-rich tract
attttttttttcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccggtaggtagtttttgctgcaagcatactgcggactctaacattgcatttggggattttttttttcttctttgttttcctattgttttgatgcacagGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCATGGATAGTAGAGCTGGACTTGGGAGTCATCAGAAGAAGTTGGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - -ctctaac
- - - - - - - - - - - - - - - - - - - - - - - -gcatttg