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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgattgatagcaagtattccttcttttccttttcaaatatgatcaatagccacatgtggttatccctagacaattttctgcattttatgtttctgaatttcaagGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC

Basic information

species Vitis vinifera
transcript Vv02s0012g00460.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 6
gtacatgattgatagcaagtattccttcttttccttttcaaatatgatcaatagccacatgtggttatccctagacaattttctgcattttatgtttctgaatttcaagGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC
  |  |   |   |  |||      || |   |||||||    || | |  | ||    |||| || | |  | | |||  | ||    |  |  ||   |  | | ||| ||  |    ||| || ||||||||||||||||||||  |||| |||||||| ||||| || ||||||||| |||| ||||||||||| || ||||   
aaatgtacctagaaagaagacgaatttatagcccttttcttg-ataaactcttgcatgttgtgtttgtactgata-aatggtgtgttcctcttcctttgtagGTACCAGGGGCAAG----CAGGGCAGAAGAAACTCAGAGCCATGTCCACAGAATGTACTTCATGGGACCTAATACTTTCCGAGAGCCCTGGCATCTCCCCTACT---

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 14
gtacatgattgatagcaagtattccttctttt------ccttttcaaatatgatcaat-agccacatgtggttatccct-agacaattttctgcattttatgtttctgaatttcaa----gGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC
||||     |||||  ||   ||||    |||         ||||  |     | | | ||||  |     ||||| || | || ||||  |||||| ||| ||| |   ||  ||    ||| || ||  | ||||||||||| ||||| || |||||  |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
gtactattctgataagaaaatttccactgtttaattagttctttctgaagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGTCATGTACACAGAATGTACTTTATGGGTCCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 14
gtacatgattgatagcaagtattccttcttttcctt-----ttcaaatatgatcaat--agccacatgtggttatccct-agacaattttctgcattttatgtttctgaatttcaa----gGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC
||||     | |||  ||   ||||    |||  ||     ||     |  || |||  ||||  |     ||||| || | || ||||  |||||| ||| ||| |   ||  ||    ||| || ||  | ||||||||||| ||||| ||||||||  |||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| |
gtactattcttataagaaaatttccactgtttaattagttctttctgcagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGCCATGTACACAGAATGTACTTTATGGGACCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacatgtggttatccctagacaattttctgcattttatgtttctgaatttcaagGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC
                                attttatgttt  TA-rich tract