Sequence
atgc intronic sequence ATGC exonic sequence...cattcttgacaatcaattttgtgaagctccttttgagtttgcatttgaatgaacttgtaatatgacgtcatttattcaactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA20G25120.2 (Glycine max), 3'ss of exon 14
-cattcttgacaatcaattttgtgaagctccttttgagtttgcatttgaatgaacttgtaatatgacgtcatttatt-caactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
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acattataatttacctgttgtgttaatgtatgctttgactgatgactctgtttattgggattat--ctatatatattgctaattcatgaatatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAGGCATTTACCAACCTTATGTGTGGGAGTATTCAAGGTTGA
upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 14
cattcttgaca-atcaattttgt-gaagctccttttgagtttgcatttgaatgaacttgtaatatgacgtcatttatt-caactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
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cattataattttacctgttgtgttgatgtatgctatgactgataacattgttta--ttgtgat-tatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 3'ss of exon 14
----------------------------------------------------------------------cattcttgacaatcaattttgtgaagctcctttt-----------gagtttgcatttgaatgaacttgtaatatgacgtcatttattcaactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
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gttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttc-ttttatgtgcataat-tgtagCTCTGTACTCTTGAATTTGAAACCCGGCGTGCTTCATACTATTGGCTGTTACATTCCCTGAGTCTCTACATGCCATATGTGTGGGAATATTCACGGTTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaatgaacttgtaatatgacgtcatttattcaactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
atttattcaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattcttgacaatcaattttgtgaagctccttttgagtttgcatttgaatgaacttgtaatatgacgtcatttattcaactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
- - - - -caatcaa
- - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - -aatgaac