Sequence
atgc intronic sequence ATGC exonic sequence...ataaatcatacataattcttctcattttcaatggtagtggcactaacagactcatattctatttgatatgtggtgtggcggtgtttgatgtggaggccagGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 15
------------------------------------------------------------------------------------------------------------ataaatcatacataattcttctcattttcaatggtagtggcactaacagactcatattctatttgatatgtggtgtggcggtgtttgatgtggaggccagGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAGAG
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gtaagttatttactctttttttttttcatggagaagaagtataattgcggctggactcttgcacagacatatgtacacacacacatggagagaatgtgacagaaagagatggag-agatagtataattttttgttagaaaagtgattgtcttatctaactcttccttttctttttatggaatgtcccgccctc---------attcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAGTT
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G26240.1 (Glycine max), 3'ss of exon 14
-----------------------------------------------------------------------------------------------------ataaatc-atacataat-tcttctcattttcaatggtagtggcactaacagactcatattctatttgatatgtggtgtggcggtgtttgatgtggaggccagGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAGAG
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gtaggttatttactctttatttccaaggagaagaaatatagttgcggccggactcttacccagacatatgtatacacacatggagagaatatgtgacataaatagatggagagatagtatattttttgttagaaaaatgatggtcttatctaactctttttcttttc---atgaaatgtccctgcccttatt--------cagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCTATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCATTTTAGTT
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT2G35020.1 (Arabidopsis thaliana), 3'ss of exon 14
ataaatcatacataattcttctcattttcaatggtagtggcactaacagactcatattct-atttgata-tgtggtgtggcggtgtttgatgtggaggccagGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAGAG
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--------------------------------gtaaagagccccatccaactcttcttttcagttgattcttttacttcactaacactcatagcttaaatagGTGTGGAAGTGTCACCATTGTGCTCGTACGCTGGAGAAAATCTAGAAGCGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAAATCTCCCTCTAATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acagactcatattctatttgatatgtggtgtggcggtgtttgatgtggaggccagGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAGAG
atattctatttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataaatcatacataattcttctcattttcaatggtagtggcactaacagactcatattctatttgatatgtggtgtggcggtgtttgatgtggaggccagGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - catacat
- - - - - - - - -cttctca
- - - - - - - - - - - - - - - - ggtagtg
- - - - - - - - - - - - - - - - - - - - cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgg