Sequence
atgc intronic sequence ATGC exonic sequencegtacattcccttgcaatactacatttttgtactcttctgctacatacatgcgtgcacaaacaaacactcatccacatctgttgaccactttgttgatctgctagAGTACCGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0532g00020.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G32450.1 (Glycine max), 3'ss of exon 13
gtacattcccttgcaatact-acatttttgtactcttctgctacatacatgcgtgcacaaacaaacactcatccacatctgttgaccactttgttgatctgctagAGTACCGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAA
|||| || |||| ||| | | || ||| || | |||| | | ||| || | || | | | |||| || || |||||||| |||||||| |||||||| |||||| | || |||||||| |||| |||| |||| | |||| || ||||||||||||||||
---------------gtactgactttttcatacattggta-tatttac-tgttcttttatcttgacaccatttc----ctgatgtacttttctctcgttta-tagAACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGAAGTGAAAGACTGTCCAGGAGTGGGGCAACCGGGGACCGGTTGAAGGAAA
upper sequence: Vv00s0532g00020.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA07G30580.1 (Glycine max), 3'ss of exon 13
gtacattcccttgcaatactacatttttgtactcttctgctacatacatgcgtgcacaaacaaacactcatccacatctgttgac-cactt-tgttgatctgctagAGTACCGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAA
|||||| | | | ||||| ||| || | | | | | | | | | | | ||| | || | |||| ||||| | | || | |||| || ||||||||||| |||||||| ||||||| |||||||| || |||||||| |||| || | |||| | ||||||| |||||||| |||||||
gtacatgctttcgtaatac---attagcatattttgttattg--ttcttttttcctc---ctgacatt-------atttcttgatgcacttctctctattttgtagAAAACTGAACAACAAGTGCAAGGTGTGCTAAACCTGATTGATCTGGCTGGAAGTGAAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAA
upper sequence: Vv00s0532g00020.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT4G05190.1 (Arabidopsis thaliana), 3'ss of exon 14
gtacattcccttgcaatactacatttttgtactcttctgctacatacatgcgtgcacaaacaaacactcatccacatctgttgaccactttgttgatctgctagAGTACCGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAA
|| || | || | | ||| ||| | | || || || || | ||| | || || | | ||| || | | | || |||| || ||||| |||||||||||||| | ||||| ||||||||||| |||||||||||||| || | ||| | |||| ||||||||||| ||||| |
gttaatatcttttgtctttcaggtttatgttttgtgttg-tagatttatttct-cacttatgaaaac--accaaca-ctctctcctatttc-----------agAGCACTGAACAGCAAGTACAAGGTGTTCTTAACCTAATTGATCTTGCTGGAAGTGAGCGACTTTCAAGGAGCGGGGCAACCGGAGACCGGTTAAAGGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcgtgcacaaacaaacactcatccacatctgttgaccactttgttgatctgctagAGTACCGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAA
aaacaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacattcccttgcaatactacatttttgtactcttctgctacatacatgcgtgcacaaacaaacactcatccacatctgttgaccactttgttgatctgctagAGTACCGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA