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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttaaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgtttggttcttgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 3'ss of exon 11
gtcttaaaattctatagtatatttctcttgcttagtga-gccaagagt-ctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgtttggttcttgcaacccagG---GACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA
||||   || |   |||| |  || | ||| ||    | |   ||| | | |    ||     |     | | |  |    |  |   |  || ||  || | ||   |  || |    |||   | ||     |||||||   |||    |||||  ||||||||||  | |||||  |||| |||       || | ||||| ||||||||||| ||||||||||| |||||||| ||||||||   
gtctgtcaaattcctagttt--tttttttgtttgaaaatgttgagaatacaaaacaattgttgcatgcattg-aggtgccctcatatgatacttcaccctaggatcatcgtattcatcattttgtttttc--cccttgcaatttagGTGGAACAAAACTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCAACATTCAATCCGAGATTGCAAAACTTCGCCATGATGTGGAGGAATATGCAAA---

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 13
gtc-ttaaaattctatagtatatttctcttgcttagtgagcca-agagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgtttggttcttgcaaccca---gGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA
|||  | ||| |||    | | | || ||     |   | ||| || | || | | |         | || |||    |    ||| |    ||  |  ||| ||   || ||  || |||| | | |||  |||||||||   |   || |||||| ||||||||||  | |||||  |||| |||     |  | |||||  |||||||||||||||||||||||| || ||||| | |||||| ||
gtcactcaaagtcttggttttttctccctaagaaaacaaaccacagtgactgtttta-----gatgcatttgcattcgttgaggtgtccttatcactagttggatgatctgat-ttatgttt-tgtttttaattcttgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGA---TAGCATCCAAGTTGAGATTGCAAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACA

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 14
gtcttaaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgtttggttcttgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA
||    ||||  |  | |||    || |   || |||         | ||||||  |||      |||     |  || |   |   || |   |||||||||  |||||||    ||| ||  | ||  ||  |   |  ||||  |||| ||||||||||||||||||||||| |||||     || || | || || ||||||||||||||||||||||| || |||||||| ||||| ||
gttcctaaatctt-caatat---cctttgagtttgtgttt----gttttatctggacactgttggtttg----agttgctgagggttgc-taagtgcttgaataaactaatatatagttgct--gattaatttattttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCAGTCAGAGATTGCAAAGCTTCGCCATGATGTTGAGGAGTACGCAAAACA

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 14
gtcttaaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgt--ttggttcttgcaac------ccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA
||  | ||||  |  | |||  |||    | || | |         | ||||||  |    |   | ||   ||| | |||             || ||   |       ||||| | |  |||||  ||| |  |  |||        |||| |||||| ||||||||||||||||||||||  ||||     ||  | | ||||| ||||| |||||||| |||| ||| || |||||||||||||| ||
gttcttaaatctt-cattatgcttcctgagttt-gcgttttttttctttatctggacgtggctgatata---aatgtttttaacttcattctgctggtttgttgggtgcttactaagctaatatgtggttgatgttaacaaaatttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTCAATCGGAGATAGCAAAGCTCCGCCTTGATGTTGAGGAGTATGCAAAACA

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 15
gtcttaaaattctatag-tatatttctcttgcttagtgagc---caagagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttga-atttactaa--tactaggtt-tctatgtttggttcttgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA
||  | |  |  || |  |  |||   ||| || |||  ||         | |||||||  |  ||   |  |  |  |    || |  | |    | || | |    |||||||  || || ||  |  |||||    | ||  || | ||| |||||| |||||||||||||||||||||| || ||     ||  | | ||||| ||||| |||||||| |||||||| || ||||| |||||||| ||
gttcttacttcttagatcttcattatgcttcctgagtttgcgtttgtttctttatctgaaaatgactcataaattattttaacttctttctgttggcttgttgggtgcttactaagctaatatgtggttgatgttgaaattttttaatc-agGAACAAAGCTGAAGGACTTCTTGGCCACAATTCAATCATCTTCTACCTTTCAATCGGAGATAGCAAAGCTCCGCCATGATGTTGAGGACTATGCAAAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781461|gb|FQ468305.1|FQ468305
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352781319|gb|FQ467765.1|FQ467765
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110709476|gb|EE084971.1|EE084971
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352768597|gb|FQ467809.1|FQ467809
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTTTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|349827018|gb|FQ419109.1|FQ419109
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|32270628|gb|CD719787.1|CD719787
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|29785535|gb|CB342622.2|CB342622
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGGAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352769659|gb|FQ468587.1|FQ468587
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352780960|gb|FQ466273.1|FQ466273
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110361521|gb|EC925002.1|EC925002
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352763948|gb|FQ465398.1|FQ465398
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352769305|gb|FQ471454.1|FQ471454
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352777762|gb|FQ466815.1|FQ466815
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110379633|gb|EC944843.1|EC944843
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|29784993|gb|CB341601.2|CB341601
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|27755145|gb|CB035900.1|CB035900
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|27578509|gb|CB001204.1|CB001204
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|32250249|gb|CD716068.1|CD716068
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110383823|gb|EC948224.1|EC948224
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|351030429|gb|FQ432367.1|FQ432367
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352781813|gb|FQ469111.1|FQ469111
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|30126288|gb|CB911627.1|CB911627
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|45771466|gb|CN007318.1|CN007318
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110361068|gb|EC924521.1|EC924521
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|83275764|gb|DV939772.1|DV939772
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352773362|gb|FQ470949.1|FQ470949
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352777748|gb|FQ466801.1|FQ466801
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352768238|gb|FQ469413.1|FQ469413
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|46911083|gb|CN546458.1|CN546458
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTTTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352768986|gb|FQ468177.1|FQ468177
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTTTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110363609|gb|EC927210.1|EC927210
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|110413717|gb|EC979522.1|EC979522
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352765218|gb|FQ465915.1|FQ465915
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTTTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352774202|gb|FQ474725.1|FQ474725
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|32461134|gb|CD802308.1|CD802308
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352781311|gb|FQ467757.1|FQ467757
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|351029249|gb|FQ435449.1|FQ435449
EST:     CTTTGACGCTGCTGTGACCGTGGTAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352767846|gb|FQ466055.1|FQ466055
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|32246995|gb|CD712814.1|CD712814
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352782190|gb|FQ470092.1|FQ470092
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|29785493|gb|CB342547.2|CB342547
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGGAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352773661|gb|FQ472443.1|FQ472443
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352772663|gb|FQ472138.1|FQ472138
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352769248|gb|FQ471397.1|FQ471397
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352772602|gb|FQ472077.1|FQ472077
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|29785469|gb|CB342488.2|CB342488
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|351013925|gb|FQ434077.1|FQ434077
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
EST: gi|352768543|gb|FQ467499.1|FQ467499
EST:     CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAG                         GGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC
genomic: CTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaat ... tgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccatgcttgaatttactaatactaggtttctatgtttggttcttgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA
               tactaat  putative branch site (score: 1)
                                         ttcttgc  putative PPT
        ttgaatttactaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcttaaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgtttggttcttgcaacccagGGACAAAGTTGAAGGACTTCTTGGCCACAATGCAGTCTAGCCCTCACCTCCAATCTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG